1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtacgaatgacgctttcacattatggatcacatttctgataaagctttgcattcagCCGGTATATGTCAAGGATGACTTTTTCGATTCTCTCTCCTGTGACACTCTGGATCGTGAGGGTGGTACCGAGCGCCCCAGGTTTTCAGAGCAACGTAAGA
species | Selaginella moellendorffii |
transcript | EFJ22693 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGACGAGCCTGTGAGCGAGAACTGGCAGAAACCGGAGGACGGGAAAAAG CCGGTATACGTCAAGGATGACTTTTTCGATTCTCTCTCCTGTGACACTCTGEST: gi|169059863|gb|FE467862.1|FE467862
genomic: AGGACGAGCCTGTGAGCGAGAACTGGCAGAAACCGGAGGACGGGAAAAAGgtacgaatga ... ttgcattcagCCGGTATATGTCAAGGATGACTTTTTCGATTCTCTCTCCTGTGACACTCTG
EST: AGGACGAGCCTGTGAGCGAGAACTGGCAGAAACCGGAGGACGGGAAAAAG CCGGTATATGTCAAGGATGACTTTTTCGATTCTCTCTCCTGTGACACTCTGEST: gi|169060934|gb|FE470564.1|FE470564
genomic: AGGACGAGCCTGTGAGCGAGAACTGGCAGAAACCGGAGGACGGGAAAAAGgtacgaatga ... ttgcattcagCCGGTATATGTCAAGGATGACTTTTTCGATTCTCTCTCCTGTGACACTCTG
EST: AGGACGAGCCTGTGAGCGAGAACTGGCAGAAACCGGAGGACGGGAAAAAG --G-TATACGTCAAGGATGACTTTTTCGATTCTCTCTCCTGTGACACTCTG
genomic: AGGACGAGCCTGTGAGCGAGAACTGGCAGAAACCGGAGGACGGGAAAAAGgtacgaatga ... ttgcattcagCCGGTATATGTCAAGGATGACTTTTTCGATTCTCTCTCCTGTGACACTCTG
tacgaatgacgctttcacattatggatcacatttctgataaagctttgcattcagCCGGTATATGTCAAGGATGACTTTTTCGATTCTCTCTCCTGTGACACTCTGGATCGTGAGGGTGGTACCGAGCGCCCCAGGTTTTCAGAGCAACGTAAGA
ttctgat putative branch site (score: 3)
acattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgaatgacgctttcacattatggatcacatttctgataaagctttgcattcagCCGGTATATGTCAAGGATGACTTTTTCGATTCTCTCTCCTGTGACACTCTGGATCGTGAGGGTGGTACCGAGCGCCCCAGGTTTTCAGAGCAACGTAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA