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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTCCCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAGgtatggatttcttccgtggtttcattgtttcctctctgaattgtttctatctttttttgtgcctctttcctttccag

Basic information

species Selaginella moellendorffii
transcript EFJ22693
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22693 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S35_182V6.2 (Physcomitrella patens), 5'ss of exon 2
TCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTCCCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAGgtatggatttcttccgtggtttcattg------tttcctctctgaattgtttctatct----ttttttgtgcctctttcctttccag---------------------------------------------------------------------------------------------
||| |||| ||| || |||||  | || |||||||| || ||||||||| | || || |  |||||||||||||| |||||||| |||||||| |||||||| || |  | |  | || | | |  |       | | | | |   || ||     ||     |   || |  |      | ||||                                                                                              
TCGGTCGTTTGGGACAGAAGGACGCAAAAAGGAAGGACCCCAGATTCCTGCTAGCGACAAAGTCTATGACTACATCATTTTTCGAGGGTCGGATATCAAGgt-tgaacctgtgac-tgatatgaaagaagaaactacgtgtttaggttcttagcgcctcaatctacctgcgaattgaatatgtccatatttggcttggaatatgtttcagtggtaactctgcattcgacccttccacgaagagtttcatgatattgagttgccttgcattatgtgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169087197|gb|FE496225.1|FE496225
EST:     CCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAG                         GATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
genomic: CCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAGgtatggattt ... tcctttccagGATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
EST: gi|169037659|gb|FE444736.1|FE444736
EST:     GTCGGACATCAAG                         GATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
genomic: GTCGGACATCAAGgtatggattt ... tcctttccagGATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
EST: gi|169041480|gb|FE449519.1|FE449519
EST:     CCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAG                         GATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
genomic: CCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAGgtatggattt ... tcctttccagGATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
EST: gi|169059864|gb|FE467863.1|FE467863
EST:     CCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAG                         GATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT
genomic: CCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAAGgtatggattt ... tcctttccagGATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCT