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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctatggcgatgtttcgctagggttggagctcgggagctcacgaatccgtgcgctcttgctttgtttccagTTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTCCCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAA

Basic information

species Selaginella moellendorffii
transcript EFJ22693
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22693 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S35_182V6.2 (Physcomitrella patens), 3'ss of exon 1
---------------------gtaggctatggcgatgtttcgctagggttg----gagctcgggagctcacgaatccgtgcgctcttgctttgtttccagTTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTCCCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAA
                      ||  ||    |   | ||   | | || |    ||  |  || | |    |||  || |    ||  ||| | | ||||||| |||| ||| || |||||  | || |||||||| || ||||||||| | || || |  |||||||||||||| |||||||| |||||||| |||||
tttacagagtcgtatttagtgttacactgcaccctgggttgagtggagtagagctgaatttaggtgatggttaatgagtccttgatttttttttatgcagTTCGGTCGTTTGGGACAGAAGGACGCAAAAAGGAAGGACCCCAGATTCCTGCTAGCGACAAAGTCTATGACTACATCATTTTTCGAGGGTCGGATATCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169087197|gb|FE496225.1|FE496225
EST:     CGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACG                         TTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTC
genomic: CGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACGgtaggctatg ... ttgtttccagTTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTC
EST: gi|169041480|gb|FE449519.1|FE449519
EST:     CGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACG                         TTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTC
genomic: CGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACGgtaggctatg ... ttgtttccagTTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTC
EST: gi|169059864|gb|FE467863.1|FE467863
EST:     CGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACG                         TTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTC
genomic: CGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACGgtaggctatg ... ttgtttccagTTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctagggttggagctcgggagctcacgaatccgtgcgctcttgctttgtttccagTTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTCCCAGGGATAGCGTCTATGACTACATTATTTTTCGTGGGTCGGACATCAA
                   agctcac  putative branch site (score: 3)
                                     ctcttgctttgtttcc  putative PPT
                                            tttgttt  TA-rich tract