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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgagtagagttttgtcaaagtcttggcatacttacgtggttttggcagGCTAACAACGGGCCTAGGCCAGAGAACTTGAGGCACGAGGGTCCGAGGCACGATGGTCAAAGGCACGAGTACAACGGAAGGTATAACTGGCGAGGAAATG

Basic information

species Selaginella moellendorffii
transcript EFJ22693
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169024789|gb|FE433310.1|FE433310
EST:     CTGCCGAAAACTCTCTGCAAGAGTCATCATCTCACTCCAAGGAGCAGCAG                         GCTAACAACGGACCTAGGCCTGAGAACTTGAGGCACGAGGGTCCGAGGCAC
genomic: CTGCCGAAAACTCTCTGCAAGAGTCATCATCTCATTCCAAGGAGCAGCAGgtgcgagtag ... gttttggcagGCTAACAACGGGCCTAGGCCAGAGAACTTGAGGCACGAGGGTCCGAGGCAC
EST: gi|169059863|gb|FE467862.1|FE467862
EST:     CTGCCGAAAACTCTCTGCAAGAGTCATCATCTCATTCCAAGGAGCAGCAG                         GCTAACAACGGGCCTAGGCCAGAGAACTTGAGGCACGAGGGTCCGAGGCAC
genomic: CTGCCGAAAACTCTCTGCAAGAGTCATCATCTCATTCCAAGGAGCAGCAGgtgcgagtag ... gttttggcagGCTAACAACGGGCCTAGGCCAGAGAACTTGAGGCACGAGGGTCCGAGGCAC
EST: gi|169060934|gb|FE470564.1|FE470564
EST:     CTGCCGAAAACTCTCTGCAAGAGTCATCATCTCACTCCAAGGAGCAGCAG                         GCTAACAACGGACCTAGGCCTGAGAACTTGAGGCACGAGGGTCCGAGGCAC
genomic: CTGCCGAAAACTCTCTGCAAGAGTCATCATCTCATTCCAAGGAGCAGCAGgtgcgagtag ... gttttggcagGCTAACAACGGGCCTAGGCCAGAGAACTTGAGGCACGAGGGTCCGAGGCAC
EST: gi|169075281|gb|FE483539.1|FE483539
EST:     CTGCCGAAAACTCTCTGCAAGAGTCATCATCTCACTCCAAGGAGCAGCAG                         GCTAACAACGGACCTAGGCCTGAGAACTTGAGGCACGAGGGTCCGAGGCAC
genomic: CTGCCGAAAACTCTCTGCAAGAGTCATCATCTCATTCCAAGGAGCAGCAGgtgcgagtag ... gttttggcagGCTAACAACGGGCCTAGGCCAGAGAACTTGAGGCACGAGGGTCCGAGGCAC
EST: gi|169058680|gb|FE466889.1|FE466889
EST:     CTGCCGAAAACTCTCTGCAAGAGTCATCATCTCACTCCAAGGAGCAGCAG                         GCTAACAACGGACCTAGGCCTGAGAACTTGAGGCACGAGGGTCCGAGGCAC
genomic: CTGCCGAAAACTCTCTGCAAGAGTCATCATCTCATTCCAAGGAGCAGCAGgtgcgagtag ... gttttggcagGCTAACAACGGGCCTAGGCCAGAGAACTTGAGGCACGAGGGTCCGAGGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcgagtagagttttgtcaaagtcttggcatacttacgtggttttggcagGCTAACAACGGGCCTAGGCCAGAGAACTTGAGGCACGAGGGTCCGAGGCACGATGGTCAAAGGCACGAGTACAACGGAAGGTATAACTGGCGAGGAAATG
                                   tacttac  putative branch site (score: 1)
                                      atactta  TA-rich tract