Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTACAGGTGAAATCTTCTCCGCAAGCTCATGCGGTCCATTCGCAGCCTTACAACGATCCGGCGATCATTGCTCAGgtgaggctttcatgctgtgatgatacgaggtactaagctgtcaagttttgttttctttcag

Basic information

species Selaginella moellendorffii
transcript EFJ22693
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169087197|gb|FE496225.1|FE496225
EST:     CTCATGCGGTCCATTCGCAGCCTTACAACGATCCGGCGATCATTGCTCAG                         TCTCAGCAGCCCCAGAAAGCGCAACGAATGTCTCAACCCATTATGGCTCCA
genomic: CTCATGCGGTCCATTCGCAGCCTTACAACGATCCGGCGATCATTGCTCAGgtgaggcttt ... tttctttcagTCTCAGCAGCCCCAGAAAGCGCAACGAATGTCTCAACCCATTATGGCTCCA
EST: gi|169037659|gb|FE444736.1|FE444736
EST:     CTCATGCGGTCCATTCGCAGCCTTACAACGATCCGGCGATCATTGCTCAG                         TCTCAGCAGCCCCAGAAAGCGCAACGAATGTCTCAACCCATTATGGCTCCA
genomic: CTCATGCGGTCCATTCGCAGCCTTACAACGATCCGGCGATCATTGCTCAGgtgaggcttt ... tttctttcagTCTCAGCAGCCCCAGAAAGCGCAACGAATGTCTCAACCCATTATGGCTCCA
EST: gi|169041480|gb|FE449519.1|FE449519
EST:     CTCATGCGGTCCATTCGCAGCCTTACAACGATCCGGCGATCATTGCTCAG                         TCTCAGCAGCCCCAGAAAGCGCAACGAATGTCTCAACCCATTATGGCTCCA
genomic: CTCATGCGGTCCATTCGCAGCCTTACAACGATCCGGCGATCATTGCTCAGgtgaggcttt ... tttctttcagTCTCAGCAGCCCCAGAAAGCGCAACGAATGTCTCAACCCATTATGGCTCCA
EST: gi|169059864|gb|FE467863.1|FE467863
EST:     CTCATGCGGTCCATTCGCAGCCTTACAACGATCCGGCGATCATTGCTCAG                         TCTCAGCAGCCCCAGAAAGCGCAACGAATGTCTCAACCCATTATGGCTCCA
genomic: CTCATGCGGTCCATTCGCAGCCTTACAACGATCCGGCGATCATTGCTCAGgtgaggcttt ... tttctttcagTCTCAGCAGCCCCAGAAAGCGCAACGAATGTCTCAACCCATTATGGCTCCA