Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGAAGCCTCATCAGCCTCACATCCAAGAGCGACATCCGCTACGAGGGCGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACGgtaggctatggcgatgtttcgctagggttggagctcgggagctcacgaatccgtgcgctcttgctttgtttccag

Basic information

species Selaginella moellendorffii
transcript EFJ22693
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22693 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os06g30060.2 (Oryza sativa), 5'ss of exon 1
ATTGGAAGCCTCATCAGCCTCACATCCAAGAGCGACATCCGCTACGAGGGCGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACGgt-aggctatggcgat--gtttcgctagggttggagctcgggagctcacgaatccgtgcgctcttgctttgtttccag----------------------
|| || ||| | || |||||||| || |||||||| ||||| ||||||||||| |||||||||||| || ||||| | | || ||||| ||||   |||||| |||||    |     |      |     |    |||  |    | |   |  |  |||    ||  | | |                          
ATCGGGAGCGTGATAAGCCTCACGTCGAAGAGCGAGATCCGGTACGAGGGCGTCCTCTACACCATCAACACCGAGGAGTCCAGCATCGGGCTCAGGAACGgttaggctcctccctcccgagctcttccccctcctcctcccgcctcccctggttgggccgcgtcggcgatctgtgggagagggtgtgtgtgtgtgccgcg

upper sequence: EFJ22693 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os01g02090.2 (Oryza sativa), 5'ss of exon 1
ATTGGAAGCCTCATCAGCCTCACATCCAAGAGCGACATCCGCTACGAGGGCGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACGgta--ggctatggcg-atgtttcgctagggttggagctcgggagctcacgaatccgtgcgctcttgctttgtttccag----------------------
|| || |||||||||||  | |||||||||||||| ||| | ||||||||| | ||||||| |||| || ||||| | | || |||||   | |  || ||||     |    |        |||    | |    |||       | |  || ||   | |   ||  |   |   |                      
ATCGGGAGCCTCATCAGTTTGACATCCAAGAGCGAGATCAGGTACGAGGGCATCCTCTACAACATCAACACCGAGGAGTCCAGCATCGGCTTGCGCAATGgtattaattccatcccgccccccgcgcccgctccccctctcatttcctcagattcgcttgattcagcgctagatttggttcccccgtgaggtgaatctca

upper sequence: EFJ22693 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G132796_T01 (Zea mays), 5'ss of exon 1
ATTGGAAGCCTCATCAGCCTCACATCCAAGAGCGACATCCGCTACGAGGGCGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACGgtaggctatggcgatgtttcgctagggttggagctcgggagctcacgaatccgtgcgctcttgctttgtttccag-----------------------------
 | || |||||||||||||| ||||| |||||||| ||| | ||||||||||| ||||||  |||| || ||||| | | || |||||  || |  || ||||        |     ||| |    |     |||| | ||  |  ||| ||| | ||  | | |||  |   |                              
CTCGGGAGCCTCATCAGCCTGACATCGAAGAGCGAGATCAGGTACGAGGGCGTCCTCTACGACATCAACACCGAGGAGTCCAGCATCGGCCTGCGCAATGgtaaatagcctcccc-cttctccgacgcgctcgctccgaagtcc--gaacccgcg-gccgtcgttttcctcggatgcgaaccttcatgacctagattcgctgct

upper sequence: EFJ22693 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G341027_T02 (Zea mays), 5'ss of exon 1
ATTGGAAGCCTCATCAGCCTCACATCCAAGAGCGACATCCGCTACGAGGGCGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACGgtaggctatggcgatgtttcgctagggttggagctcgggagctcacgaatccgtgcgctcttgctttgtttccag------------------------------
|| || ||| | || |||||||  || |||||||| ||||| ||||||||||| || ||||||||| || ||||| | | || ||||| |||  ||||||||||| |   || || ||     | || |   ||||     |||     |  ||| | |  |  | ||||    |                              
ATCGGGAGCTTGATAAGCCTCATGTCGAAGAGCGAGATCCGGTACGAGGGCGTCCTGTACACCATCAACACCGAGGAGTCCAGCATCGGGCTAAAAAACGgtaggat---gccatattatctaacggctctcgctctctt-ctcgtcc-taggtgggttggtattctgttggtggaacatgatagttgtttgaccatgcgtcagg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169087197|gb|FE496225.1|FE496225
EST:     CGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACG                         TTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTC
genomic: CGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACGgtaggctatg ... ttgtttccagTTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTC
EST: gi|169041480|gb|FE449519.1|FE449519
EST:     CGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACG                         TTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTC
genomic: CGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACGgtaggctatg ... ttgtttccagTTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTC
EST: gi|169059864|gb|FE467863.1|FE467863
EST:     CGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACG                         TTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTC
genomic: CGTGCTCTACACCATCGACGCCGAGAACTGCAACATCGCGCTCCAAAACGgtaggctatg ... ttgtttccagTTCGTTCGTATGGAACCGAAGGGAGGAAGAAGGAAGGGCCGCAGATTCCTC