1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gttagtactcgtgctgcgcatacgccctacttgaagtctctagtgaatctttttcattagtgacccagttcctgctgcctgcgacattaggaggtgaaagttgaccaaaatagtcaccagcatgaaacaaaaattcatagtttaatcgctcaaagttctttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAGACTCGTCTCAAACCAAGGGAAAAGTATCTGCAACTGCAAGTTAAGGCG
species | Physcomitrella patens |
transcript | PP1S9_141V6.1 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAEST: gi|162163003|gb|FC338393.1|FC338393
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
EST: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAEST: gi|162172364|gb|FC348305.1|FC348305
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
EST: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAEST: gi|19789134|gb|BQ041118.1|BQ041118
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
EST: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAEST: gi|162159762|gb|FC336343.1|FC336343
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
EST: TGGAAATGATGGCTCANATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTAEST: gi|162159761|gb|FC336342.1|FC336342
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTA
EST: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAEST: gi|162184621|gb|FC360819.1|FC360819
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
EST: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAEST: gi|37828017|gb|BJ586029.1|BJ586029
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
EST: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAEST: gi|162151013|gb|FC327909.1|FC327909
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
EST: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAEST: gi|162175535|gb|FC350966.1|FC350966
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
EST: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAEST: gi|162180612|gb|FC356969.1|FC356969
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
EST: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAEST: gi|162261061|gb|FC436935.1|FC436935
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
EST: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAEST: gi|162262116|gb|FC436871.1|FC436871
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
EST: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAEST: gi|162175534|gb|FC350965.1|FC350965
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
EST: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAG TTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
genomic: TGGAAATGATGGCTCAAATTCGGCGAAATGTTATATACTCTGTTTACCAGgttagtactc ... tttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAA
tcaccagcatgaaacaaaaattcatagtttaatcgctcaaagttctttcttgcagTTTCAACCAGTGATGGCGACGCCTACAGCCGCAAATGGTAGTAGCAAGAAAGACTCGTCTCAAACCAAGGGAAAAGTATCTGCAACTGCAAGTTAAGGCG
gtttaat putative branch site (score: 9)
ttctttcttgc putative PPT
aaacaaaaattcatag TA-rich tract