1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GGTAGTAAGGCTGAGTGACGAGGAAATCCCCTTCCAAAAAACCAAGAAATTACCAACCAAGAAGACATGGAAGgtatgtacgatgtttgcatattcatacgttattaatgttgcaagtatgttgcctttcccaatttatgtcaccatgcactcggtgcttcattgcatcgcca...
species | Physcomitrella patens |
transcript | PP1S9_141V6.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAATCCCCTTCCAAAAAACCAAGAAATTACCAACCAAGAAGACATGGAAG GTCAATCCAAGCCTGTTCCCTTGCGAGCTGTCAAATGATTGCGCAACACTGEST: gi|162163004|gb|FC338394.1|FC338394
genomic: AAATCCCCTTCCAAAAAACCAAGAAATTACCAACCAAGAAGACATGGAAGgtatgtacga ... ggtttctcagGTCAATCCAAGCCTGTTCCCTTGCGAGCTGTCAAATGATTGCGCAACACTG
EST: AAATCCCCTTCCAAAAAACCAAGAAATTACCAACCAAGAAGACATGGAAG GTCAATCCAAGCCTGTTCCCTTGCGAGCTGTCAAATGATTGCGCAACACTGEST: gi|162257358|gb|FC433441.1|FC433441
genomic: AAATCCCCTTCCAAAAAACCAAGAAATTACCAACCAAGAAGACATGGAAGgtatgtacga ... ggtttctcagGTCAATCCAAGCCTGTTCCCTTGCGAGCTGTCAAATGATTGCGCAACACTG
EST: AAATCCCCTTCCAAAAAACCAAGAAATTACCAACCAAGAAGACATGGAAG GTCAATCCAAGCCTGTTCCCTTGCGAGCTGTCAAATGATTGCGCAACACTGEST: gi|162172365|gb|FC348306.1|FC348306
genomic: AAATCCCCTTCCAAAAAACCAAGAAATTACCAACCAAGAAGACATGGAAGgtatgtacga ... ggtttctcagGTCAATCCAAGCCTGTTCCCTTGCGAGCTGTCAAATGATTGCGCAACACTG
EST: AAATCCCCTTCCAAAAAACCAAGAAATTACCAACCAAGAAGACATGGAAG GTCAATCCAAGCCTGTTCCCTTGCGAGCTGTCAAATGATTGCGCAACACTG
genomic: AAATCCCCTTCCAAAAAACCAAGAAATTACCAACCAAGAAGACATGGAAGgtatgtacga ... ggtttctcagGTCAATCCAAGCCTGTTCCCTTGCGAGCTGTCAAATGATTGCGCAACACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTAGTAAGGCTGAGTGACGAGGAAATCCCCTTCCAAAAAACCAAGAAATTACCAACCAAGAAGACATGGAAGgtatgtacgatgtttgcatattcatacgttattaatgttgcaagtatgttgcctttcccaatttatgtcaccatgcactcggtgcttcattgcatcgcca
- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG