1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GCAAACGTGGACTCATCCCTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCAgtaagactcaagccttagaagtcatctgaacccgcaccatttttcgcttttatctcttgtttaccttcttctgcatttcattcaaatatgtgtgtgtgtg...
species | Physcomitrella patens |
transcript | PP1S9_141V6.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCA ATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTGEST: gi|162261062|gb|FC436936.1|FC436936
genomic: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCAgtaagactca ... tgtattgtagATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTG
EST: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCA ATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTGEST: gi|162163003|gb|FC338393.1|FC338393
genomic: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCAgtaagactca ... tgtattgtagATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTG
EST: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCA ATACTGTTACNTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTGEST: gi|162262117|gb|FC436872.1|FC436872
genomic: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCAgtaagactca ... tgtattgtagATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTG
EST: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCA ATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTGEST: gi|162159762|gb|FC336343.1|FC336343
genomic: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCAgtaagactca ... tgtattgtagATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTG
EST: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCA ATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTGEST: gi|162184621|gb|FC360819.1|FC360819
genomic: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCAgtaagactca ... tgtattgtagATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTG
EST: GGAAGAAT-GAATTTAGAAGCTTTATGTGCAAAAGTCAAGCA ATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTGEST: gi|37828017|gb|BJ586029.1|BJ586029
genomic: GGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCAgtaagactca ... tgtattgtagATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTG
EST: TTCCTCAGGAAGAATGGAATTTAGAAGCTTTTATGTGCAAAAGTCAAGCA ATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTGEST: gi|162180612|gb|FC356969.1|FC356969
genomic: TTCCTCAGGAAGAATGGAATTTAGAAGC-TTTATGTGCAAAAGTCAAGCAgtaagactca ... tgtattgtagATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTG
EST: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCA ATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTGEST: gi|162261061|gb|FC436935.1|FC436935
genomic: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCAgtaagactca ... tgtattgtagATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTG
EST: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCA ATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTGEST: gi|162262116|gb|FC436871.1|FC436871
genomic: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCAgtaagactca ... tgtattgtagATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTG
EST: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCA ATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTG
genomic: CTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCAgtaagactca ... tgtattgtagATACTGTTACCTGCTGGAGGATTTGACACCTGAGCTATTGAATGAGAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAACGTGGACTCATCCCTTCCTCAGGAAGAATGGAATTTAGAAGCTTTATGTGCAAAAGTCAAGCAgtaagactcaagccttagaagtcatctgaacccgcaccatttttcgcttttatctcttgtttaccttcttctgcatttcattcaaatatgtgtgtgtgtg
- - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - AGAAGC