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gtgatgccagattctatgaagttcgacgttgagatgttagccttaagattttgttcagtatgaggaccgcgtgcatcatttcactcatgatcggcacgttgcttcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACTTCGTCCTCTCACAAACCGACAATCTTTGGAAAGAGCATTTACAAGCTT
species | Physcomitrella patens |
transcript | PP1S9_141V6.1 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: GTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|162180613|gb|FC356970.1|FC356970
genomic: GTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|162261062|gb|FC436936.1|FC436936
genomic: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|162163003|gb|FC338393.1|FC338393
genomic: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|162172364|gb|FC348305.1|FC348305
genomic: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|162159762|gb|FC336343.1|FC336343
genomic: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|162159761|gb|FC336342.1|FC336342
genomic: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: TGGTGA-TATTCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|162184621|gb|FC360819.1|FC360819
genomic: TGGTGATTA-TCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|37828017|gb|BJ586029.1|BJ586029
genomic: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|162151013|gb|FC327909.1|FC327909
genomic: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: CGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|162175535|gb|FC350966.1|FC350966
genomic: CGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|162180612|gb|FC356969.1|FC356969
genomic: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|162261061|gb|FC436935.1|FC436935
genomic: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|162262116|gb|FC436871.1|FC436871
genomic: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACEST: gi|162175534|gb|FC350965.1|FC350965
genomic: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
EST: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAG AGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
genomic: TTGGTGATTATCTTCGCATGCGGGGCCGTGAGGCATATGTCGAGAAAAAGgtgatgccag ... tcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATAC
tatgaggaccgcgtgcatcatttcactcatgatcggcacgttgcttcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACTTCGTCCTCTCACAAACCGACAATCTTTGGAAAGAGCATTTACAAGCTT
ttgcttc CT-rich tract
atcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgccagattctatgaagttcgacgttgagatgttagccttaagattttgttcagtatgaggaccgcgtgcatcatttcactcatgatcggcacgttgcttcaaatgcagAGAATTGTGACGGAGAAAGCTCCAGGGCTTATGGAAGAAGCTGAGCGATACTTCGTCCTCTCACAAACCGACAATCTTTGGAAAGAGCATTTACAAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT