1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...cacgttagtcaggaggttgtcaatccaggaagagtattgaattcggattctatgttgttgaaacttctgcatgcttcatggatattttcggatggcgcagGGCTTAATGAAAGCATTTAGGGTTGAAGATCTTCCTATCGAGTCAAAAATGCTTACAAAGTCTCTAGATGAAGCTCAAAAGAAGGTAGAGAGTTATTTCT
species | Physcomitrella patens |
transcript | PP1S9_141V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TAAGCTTGGAAGACAACATCTTTAGGATTTTTGGTGGTGATCGCATACAG GGCTTAATGAAAGCATTTAGGGTTGAAGATCTTCCTATCGAGTCAAAAATGEST: gi|162184622|gb|FC360820.1|FC360820
genomic: TAAGCTTGGAAGACAACATCTTTAGGATTTTTGGTGGTGATCGCATACAGgtaattatat ... gatggcgcagGGCTTAATGAAAGCATTTAGGGTTGAAGATCTTCCTATCGAGTCAAAAATG
EST: TAAGCTTGGAAGACAACATCTTTAGGATTTTTGGTGGTGATCGCATACAG GGCTTAATGAAAGCATTTAGGGTTGAAGATCTTCCTATCGAGTCAAAA-TGEST: gi|162261062|gb|FC436936.1|FC436936
genomic: TAAGCTTGGAAGACAACATCTTTAGGATTTTTGGTGGTGATCGCATACAGgtaattatat ... gatggcgcagGGCTTAATGAAAGCATTTAGGGTTGAAGATCTTCCTATCGAGTCAAAAATG
EST: TAAGCTTGGAAGACAACATCTTTAGGATTTTTGGTGGTGATCGCATACAG GGCTTAATGAAAGCATTTAGGGTTGAAGATCTTCCTATCGAGTCAAAAATGEST: gi|162262117|gb|FC436872.1|FC436872
genomic: TAAGCTTGGAAGACAACATCTTTAGGATTTTTGGTGGTGATCGCATACAGgtaattatat ... gatggcgcagGGCTTAATGAAAGCATTTAGGGTTGAAGATCTTCCTATCGAGTCAAAAATG
EST: AAGCTTGGAAGACAACATCTTTAGGATTTTTTGGTGGTGATCGCATACAG GGCTTAATGAAAGCATTTAGGGTTGAAGATCTTCCTATCGAGTCAAAAATG
genomic: AAGCTTGGAAGACAACATCTTTAGGA-TTTTTGGTGGTGATCGCATACAGgtaattatat ... gatggcgcagGGCTTAATGAAAGCATTTAGGGTTGAAGATCTTCCTATCGAGTCAAAAATG
gattctatgttgttgaaacttctgcatgcttcatggatattttcggatggcgcagGGCTTAATGAAAGCATTTAGGGTTGAAGATCTTCCTATCGAGTCAAAAATGCTTACAAAGTCTCTAGATGAAGCTCAAAAGAAGGTAGAGAGTTATTTCT
atatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacgttagtcaggaggttgtcaatccaggaagagtattgaattcggattctatgttgttgaaacttctgcatgcttcatggatattttcggatggcgcagGGCTTAATGAAAGCATTTAGGGTTGAAGATCTTCCTATCGAGTCAAAAATGCTTACAAAGTCTCTAGATGAAGCTCAAAAGAAGGTAGAGAGTTATTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttca