1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tattctcaattccattaacaagattctggtacaatcttgacaataacttcttacgttaactaaactacaacaatgactaaacatggcatgttttctgaagGTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCAAGGCGAATTGACAATCAG
species | Physcomitrella patens |
transcript | PP1S9_141V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TAGCTATTCTGTCGGAGTACAAGACTTATACCGATGAAGAGAAGAAAAAG GTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCAEST: gi|162261062|gb|FC436936.1|FC436936
genomic: TAGCTATTCTGTCGGAGTACAAGACTTATACCGATGAAGAGAAGAAAAAGgtacatagcc ... ttttctgaagGTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCA
EST: CAAGACTTATACCGATGAAGAGAAGAAAAAG GTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCAEST: gi|162262117|gb|FC436872.1|FC436872
genomic: CAAGACTTATACCGATGAAGAGAAGAAAAAGgtacatagcc ... ttttctgaagGTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCA
EST: TAGCTATTCTGTCGGAGTACAAGACTTATACCGATGAAGAGAAGAAAAAG GTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCAEST: gi|162163004|gb|FC338394.1|FC338394
genomic: TAGCTATTCTGTCGGAGTACAAGACTTATACCGATGAAGAGAAGAAAAAGgtacatagcc ... ttttctgaagGTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCA
EST: TAGCTATTCTGTCGGAGTACAAGACTTATACCGATGAAGAGAAGAAAAAG GTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCA
genomic: TAGCTATTCTGTCGGAGTACAAGACTTATACCGATGAAGAGAAGAAAAAGgtacatagcc ... ttttctgaagGTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCA
acttcttacgttaactaaactacaacaatgactaaacatggcatgttttctgaagGTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCAAGGCGAATTGACAATCAG
gactaaa putative branch site (score: 6)
tgttttct putative PPT
ttaactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattctcaattccattaacaagattctggtacaatcttgacaataacttcttacgttaactaaactacaacaatgactaaacatggcatgttttctgaagGTGGTAGCGGCAGGGGGACTTCATGTGGTTGGCACCGAGAGGCATGAATCAAGGCGAATTGACAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG