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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattttatccactaagcacaggctgcaaatggtcctggtttcgctctgaatatgctttcatttctcggcaccattttcttgggtattgcttgaccttgtgtacaaactcgaatctgctgactctcgcttggtttgggctacataaattgtcttctacttctccactctag

Basic information

species Physcomitrella patens
transcript PP1S99_59V6.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S99_59V6.3 (Physcomitrella patens), 5'ss of exon 6
lower sequence: LOC_Os09g10600.1 (Oryza sativa), 5'ss of exon 7
GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattttatccactaagcacaggctgcaaatggtcctggtttcgctctgaatatgctttcatttctcggcaccattttcttgggtattgcttgaccttgtgtacaaactcgaatctgctgactctcgcttggtttgggctacataaattgtcttctacttctccactctag
||| ||| ||| |||||||| |||||| || |||||||||||||| || || || ||||| ||||| ||||||||| | |||||| | || | | || | | || | || |||| || || | | | | || || | || || ||||
GAAGTTGCTGAAACTGTGAAGAATGACTTTGGTACCATTGACATCCTCGTACACTCTCTTGCAAATGGTCCTGAGgtatg--------ccactatctttctctt--------tctttatctcattgtcgtcatctgattatc-ctcgtcatcactaacatctatttttttttattttctgctcaaag---------------------------------------------------------------

upper sequence: PP1S99_59V6.3 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 7
GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattttatccactaagcacaggctgcaaatggtcctggtttcgctctgaatatgctttcatttctcggcaccattttcttgggtattgcttgaccttgtgtacaaactcgaatctgctgactctcgcttggtttgggctacataaattgtcttctacttctccactctag
||| ||| ||| |||| || | ||||| |||| ||| || ||||| ||||| ||||||||||||||||| |||||| | || || ||| | || || | || | | | | ||||| || | | | | | | | |
GAAGTTGCTGAATCTGTTAAAGAAGACTTTGGCAGCATAGATATCCTTGTGCACTCACTTGCCAATGGACCAGAGgtacaa--taaattcattaa---taagcattgaa-gttcttttatgaatttggtatatgactttaataaaaagtaaactctgatatag---------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208367744|gb|DC943990.1|DC943990
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208367480|gb|DC954940.1|DC954940
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208362286|gb|DC954532.1|DC954532
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208362869|gb|DC950819.1|DC950819
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|162157331|gb|FC333459.1|FC333459
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCG
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCG
EST: gi|208372849|gb|DC956250.1|DC956250
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208386432|gb|DC949119.1|DC949119
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208375226|gb|DC948751.1|DC948751
EST:     CATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: CATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208363947|gb|DC950351.1|DC950351
EST:     ANTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208397247|gb|DC920876.1|DC920876
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208366289|gb|DC943835.1|DC943835
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208363068|gb|DC957995.1|DC957995
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|162177043|gb|FC353096.1|FC353096
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAAAGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208372302|gb|DC948491.1|DC948491
EST:     ACTTCNGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208369171|gb|DC956046.1|DC956046
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|67723723|gb|BJ973982.1|BJ973982
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208366442|gb|DC947610.1|DC947610
EST:     ACTTCGGCACCANTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGCC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208370554|gb|DC951590.1|DC951590
EST:     ACTTCGGCACCANTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208368605|gb|DC947922.1|DC947922
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208390945|gb|DC945934.1|DC945934
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208367603|gb|DC954979.1|DC954979
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208390278|gb|DC949518.1|DC949518
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|162280154|gb|FC455963.1|FC455963
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208369757|gb|DC951888.1|DC951888
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACNTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208381939|gb|DC923449.1|DC923449
EST:     ANTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208391966|gb|DC949429.1|DC949429
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208387185|gb|DC945484.1|DC945484
EST:     ACTTCGGCACCA-TGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208385469|gb|DC953088.1|DC953088
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208398833|gb|DC920781.1|DC920781
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|162280155|gb|FC455964.1|FC455964
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208366370|gb|DC943874.1|DC943874
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208369942|gb|DC944280.1|DC944280
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|67725969|gb|BJ976228.1|BJ976228
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCACGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|67727485|gb|BJ977744.1|BJ977744
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208372820|gb|DC956221.1|DC956221
EST:     CTTCNGNCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: CTTC-GGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208373621|gb|DC952446.1|DC952446
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208370482|gb|DC952185.1|DC952185
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|208392926|gb|DC928612.1|DC928612
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
EST: gi|67727277|gb|BJ977536.1|BJ977536
EST:     ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAG                         GTAANCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC
genomic: ACTTCGGCACCATTGACATCCTGGTGCATTCACTTGCCAATGGACCTGAGgtagggattt ... tccactctagGTAACCAAGCCACTTCTGGAGACCTCTCGCAACGGTTATTTGGCAGCAGTC