1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGCTATTGCCAAAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctttgaacctgattgaatttttgatcattcagcagaactgctagtgctgttcttggtctactctgcggagttttatttgatcgattttctttttcttttggacaatgcag
species | Physcomitrella patens |
transcript | PP1S99_59V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCEST: gi|208372849|gb|DC956250.1|DC956250
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: CGGAACCTGGGTGCCT GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCEST: gi|18373999|gb|BJ205577.1|BJ205577
genomic: CGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGAEST: gi|208363068|gb|DC957995.1|DC957995
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGA
EST: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCCEST: gi|208357946|gb|DC943058.1|DC943058
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
EST: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCT GCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
genomic: AAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctt ... gacaatgcagGCTCTCAACATCTTTGAGAGCAGTTTGAGGAGAGGCAAGTTCGACGAGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCATTGCTGGTGTGGCTGATGATCAAGGTTTTGGCTGGGCTATTGCCAAAGCCCTGTCAGCAGCTGGAGCTGAAATCCTTGTCGGAACCTGGGTGCCTgtacgttctttgaacctgattgaatttttgatcattcagcagaactgctagtgctgttcttggtctactctgcggagttttatttgatcgattttctttttcttttggacaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA