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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttcaaagactctttttgtccgaagatttttgaaatgttagtatgacattgtgtctgaaaagccgagagagtgaagctctatatcttcaccctc...

Basic information

species Physcomitrella patens
transcript PP1S99_59V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208367744|gb|DC943990.1|DC943990
EST:     ATAATAAGAGATACGC-NGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208367480|gb|DC954940.1|DC954940
EST:     ATAAAGAATAATAAGAGATACGCTGGATCAGAAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAAAGAATAATAAGAGATACGCTGGATCAG-AAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208362286|gb|DC954532.1|DC954532
EST:     TAAGAGATACGC-NGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: TAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208362869|gb|DC950819.1|DC950819
EST:     ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|162157331|gb|FC333459.1|FC333459
EST:     ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208372849|gb|DC956250.1|DC956250
EST:     ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208386432|gb|DC949119.1|DC949119
EST:     ATAATAAGAGATACGC-NGATCAGAAGCATGGACTGTGNAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208363947|gb|DC950351.1|DC950351
EST:     TCAGAAGCATGGACTGTGNAG                         GAATGTGCCGAAGCTGTGAAGGCTGANTTCGGCACCATTGACATCCTGGTG
genomic: TCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208397247|gb|DC920876.1|DC920876
EST:     TAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: TAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208366289|gb|DC943835.1|DC943835
EST:     AGAGATACGC-NGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: AGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208363068|gb|DC957995.1|DC957995
EST:     ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|162177043|gb|FC353096.1|FC353096
EST:     ATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208372302|gb|DC948491.1|DC948491
EST:     GATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCNGCACCATTGACATCCTGGTG
genomic: GATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208369171|gb|DC956046.1|DC956046
EST:     ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGNAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|67723723|gb|BJ973982.1|BJ973982
EST:     GGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: GGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208366442|gb|DC947610.1|DC947610
EST:     ATACGCTGGATCAGNAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCANTGACATCCTGGTG
genomic: ATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208370554|gb|DC951590.1|DC951590
EST:     ATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCANTGACATCCTGGTG
genomic: ATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208368605|gb|DC947922.1|DC947922
EST:     ATAAGAGATACGCTGG-TCAGAAGCATNGACTGTGNAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208390945|gb|DC945934.1|DC945934
EST:     -TTAAGAATTATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208367603|gb|DC954979.1|DC954979
EST:     AGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: AGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208390278|gb|DC949518.1|DC949518
EST:     AGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: AGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|162280154|gb|FC455963.1|FC455963
EST:     ACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208357946|gb|DC943058.1|DC943058
EST:     ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCNGCACCATTGACATCCTGGTG
genomic: ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208369757|gb|DC951888.1|DC951888
EST:     AATAAGAGATACGC-NGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: AATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208381939|gb|DC923449.1|DC923449
EST:     TAAGAGATACGCTGGATCAGAAGCATGGACTGNGAAG                         GAATGTGCCGNAGCTGTGNAGGCTGANTTCGGCACCATTGACATCCTGGTG
genomic: TAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208391966|gb|DC949429.1|DC949429
EST:     TAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: TAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208387185|gb|DC945484.1|DC945484
EST:     GATCAGAAGCATNGACTGTGAAG                         G-ATGTGCCGNAGCTGTGNAGGCTGACTTCGGCACCA-TGACATCCTGGTG
genomic: GATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208385469|gb|DC953088.1|DC953088
EST:     AGAGATACGCTNGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: AGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208398833|gb|DC920781.1|DC920781
EST:     AGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGNAGGGCTGACTTCGGCACCATTGACATCCTGGT
genomic: AGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTG-AAGGCTGACTTCGGCACCATTGACATCCTGGT
EST: gi|162280155|gb|FC455964.1|FC455964
EST:     ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208369942|gb|DC944280.1|DC944280
EST:     ATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGNAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|67725969|gb|BJ976228.1|BJ976228
EST:     ATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|67727485|gb|BJ977744.1|BJ977744
EST:     ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208372820|gb|DC956221.1|DC956221
EST:     TCAGNAGCATGGACTGTGAAG                         GAATGTGCCGAAAGCTGTGAAGGCTGACTTCNGNCACCATTGACATCCTGG
genomic: TCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCG-AAGCTGTGAAGGCTGACTTC-GGCACCATTGACATCCTGG
EST: gi|208373621|gb|DC952446.1|DC952446
EST:     ATATAAAGAATAATAAGAGATACGCTGGATCAGNAGCATGGACTGTGNAG                         GAATGTGCCGNAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208370482|gb|DC952185.1|DC952185
EST:     ATAATAAGAGATACGCTGGATCAGNAGCATGGACTGTGAAG                         GAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
genomic: ATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAAGCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGTG
EST: gi|208392926|gb|DC928612.1|DC928612
EST:     TAAGAGATACGCTNGATCAGAAGCATGGACTGTGNAG                         GAATGTGCNGAAGGCTGTG-AGGCTGACTTCGGCACCATTGACATCCTGGT
genomic: TAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttc ... tattgtgcagGAATGTGCCGAA-GCTGTGAAGGCTGACTTCGGCACCATTGACATCCTGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGgtagttcttcaaagactctttttgtccgaagatttttgaaatgttagtatgacattgtgtctgaaaagccgagagagtgaagctctatatcttcaccctc

- AAAGAA
- - - - - - AAGAGA
- - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - CATGGA