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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcgagttctacgaggcccctcctcctcctccatcgcctttgtaaccctgcgtggacgatcgcctcgtttgtttcatagttgctccacttctctcgccttgtttttgtgtgtgtgggtgtgtgagtgtgagagattttgttcttctgctcctccgtgcaggtgccctcattgtgttgtagaatattgtattgcagTTCGGTGTTCGTGATTTGGGATTCAATGGCCACTGTGTCGATGCTGGCTGTGGCAGCGGCGGCTGCGATTGCACCGCATGCCGCATCGCCCACTGTGGAA

Basic information

species Physcomitrella patens
transcript PP1S99_59V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18373999|gb|BJ205577.1|BJ205577
EST:     TCGTTTTCATCGACTGAGCAAAGCAGAGCTCCGAGTCAAG                         TTCGGTGTTCGTGATTTGGGATTCAATGGCCACTGTGTCGATGCTGGCTGT
genomic: TCGTTTTCATCGACTGAGCAAAGCAGAGCTCCGAGTCAAGgcgagttcta ... tgtattgcagTTCGGTGTTCGTGATTTGGGATTCAATGGCCACTGTGTCGATGCTGGCTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttctgctcctccgtgcaggtgccctcattgtgttgtagaatattgtattgcagTTCGGTGTTCGTGATTTGGGATTCAATGGCCACTGTGTCGATGCTGGCTGTGGCAGCGGCGGCTGCGATTGCACCGCATGCCGCATCGCCCACTGTGGAA
                                     tagaatattgtatt  TA-rich tract