1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGATgtaagtgaactatctactcggctcccatgtcacttctgagatcgttctactcagacgccacattctatggtatattttttcattgagtcgtcggtttctt...
species | Physcomitrella patens |
transcript | PP1S99_59V6.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCTGATGATGTCCCTGAGGAT ATAAAGAATAATAAGAGATACGCTGGATCAGAAAGCATGGACTGTGAAGEST: gi|208362869|gb|DC950819.1|DC950819
genomic: CCTGATGATGTCCCTGAGGATgtaagtgaac ... ttttctccagATAAAGAATAATAAGAGATACGCTGGATCAG-AAGCATGGACTGTGAAG
EST: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGAT ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGEST: gi|162157331|gb|FC333459.1|FC333459
genomic: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGATgtaagtgaac ... ttttctccagATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG
EST: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGAT ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGEST: gi|208372849|gb|DC956250.1|DC956250
genomic: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGATgtaagtgaac ... ttttctccagATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG
EST: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGAT ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGEST: gi|208363068|gb|DC957995.1|DC957995
genomic: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGATgtaagtgaac ... ttttctccagATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG
EST: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGAT ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGEST: gi|208369171|gb|DC956046.1|DC956046
genomic: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGATgtaagtgaac ... ttttctccagATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG
EST: GCTG-TTTCGACA-TCCTGATGA-GTCCCTG-GGAT ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGNAGEST: gi|208390945|gb|DC945934.1|DC945934
genomic: GCTGTTTTCGACACTCCTGATGATGTCCCTGAGGATgtaagtgaac ... ttttctccagATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG
EST: TGATGATGTCCCTGAGGAT -TTAAGAATTATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGEST: gi|208357946|gb|DC943058.1|DC943058
genomic: TGATGATGTCCCTGAGGATgtaagtgaac ... ttttctccagATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG
EST: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGAT ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGEST: gi|162280155|gb|FC455964.1|FC455964
genomic: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGATgtaagtgaac ... ttttctccagATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG
EST: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGAT ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAGEST: gi|67727485|gb|BJ977744.1|BJ977744
genomic: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGATgtaagtgaac ... ttttctccagATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG
EST: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGAT ATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG
genomic: TCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGATgtaagtgaac ... ttttctccagATAAAGAATAATAAGAGATACGCTGGATCAGAAGCATGGACTGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCCCCAACGGAGGGCTATTGGAGATAGCGAAAGTCTATCCTCTGGATGCTGTTTTCGACACTCCTGATGATGTCCCTGAGGATgtaagtgaactatctactcggctcccatgtcacttctgagatcgttctactcagacgccacattctatggtatattttttcattgagtcgtcggtttctt
- - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT