1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGAAAGTGGTGGTATCATCAATTATATTGGTACCTTCCAATCTGCATTAGTTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttttcaatcattgtggctttgttttttgactgagggtagttgtagctttgttgcaaagcttggtatttgaaaaatatttgagatatacataga...
species | Physcomitrella patens |
transcript | PP1S96_37V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|208397989|gb|DC920721.1|DC920721
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|37852566|gb|BJ610574.1|BJ610574
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|18337419|gb|BJ169443.1|BJ169443
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|208394905|gb|DC920192.1|DC920192
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|208373028|gb|DC948793.1|DC948793
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|208360788|gb|DC946484.1|DC946484
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|37846901|gb|BJ604909.1|BJ604909
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|208370080|gb|DC948147.1|DC948147
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAGG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|18332816|gb|BJ164829.1|BJ164829
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|208353378|gb|DC918476.1|DC918476
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|162190304|gb|FC366462.1|FC366462
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|67698107|gb|BJ958340.1|BJ958340
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|37822729|gb|BJ580795.1|BJ580795
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGTEST: gi|208394901|gb|DC920188.1|DC920188
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
EST: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAG TTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
genomic: TTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttt ... gtctgcacagTTCGCAAGACTCTATCCACTGGAACAGAGAGACTTGGGTCCATCACCTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAAGTGGTGGTATCATCAATTATATTGGTACCTTCCAATCTGCATTAGTTGCACGTTCTATGAACAAGCCTGTCTATGTTGCTGCAGAAAGCTATAAGgtacattttttcaatcattgtggctttgttttttgactgagggtagttgtagctttgttgcaaagcttggtatttgaaaaatatttgagatatacataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG