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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAGgtgagaagctggacggatgcaaaataatcggagttcaaagaatctcgttgtggcgccctttccatcatgtgtgcttcataatggtcaagaggatatggaa...

Basic information

species Physcomitrella patens
transcript PP1S96_37V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162190305|gb|FC366463.1|FC366463
EST:     GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG                         GCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
genomic: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAGgtgagaagct ... ggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
EST: gi|208359160|gb|DC934663.1|DC934663
EST:     GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG                         GCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
genomic: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAGgtgagaagct ... ggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
EST: gi|208400609|gb|DC904585.1|DC904585
EST:     GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG                         GCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
genomic: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAGgtgagaagct ... ggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
EST: gi|18367417|gb|BJ199500.1|BJ199500
EST:     GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG                         GCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
genomic: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAGgtgagaagct ... ggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
EST: gi|208374643|gb|DC931982.1|DC931982
EST:     GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG                         GCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
genomic: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAGgtgagaagct ... ggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
EST: gi|208352201|gb|DC906304.1|DC906304
EST:     GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG                         GCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
genomic: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAGgtgagaagct ... ggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC