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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtttcttttgctgtttgtctcccatcgtctcaaacaaattcgattttctacgatgttgaacagcttctgggctccctgtgcatatctgaactcgttaagAACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG

Basic information

species Physcomitrella patens
transcript PP1S96_37V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162190305|gb|FC366463.1|FC366463
EST:     CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG                         AACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAG
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... actcgttaagAACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAG
EST: gi|208359160|gb|DC934663.1|DC934663
EST:     CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG                         AACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAG
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... actcgttaagAACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAG
EST: gi|208400609|gb|DC904585.1|DC904585
EST:     CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG                         AACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAG
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... actcgttaagAACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAG
EST: gi|18367417|gb|BJ199500.1|BJ199500
EST:     CGGTGCCCTAGGGGATTCAACTTANCACGAAGGAGGATTCATTGCTGAGG                         AACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAG
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... actcgttaagAACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAG
EST: gi|208374643|gb|DC931982.1|DC931982
EST:     CGATGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG                         AACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAG
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... actcgttaagAACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAG
EST: gi|208352201|gb|DC906304.1|DC906304
EST:     CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGG                         AACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAG
genomic: CGGTGCCCTAGGGGATTCAACTTAGCACGAAGGAGGATTCATTGCTGAGGgtttggagcc ... actcgttaagAACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtttcttttgctgtttgtctcccatcgtctcaaacaaattcgattttctacgatgttgaacagcttctgggctccctgtgcatatctgaactcgttaagAACAAGATGAAGGCGGATAAGGCAGTGGAGGATGTAGGAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG

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