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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagccattgtatggtaacactcatgttaaccctatggttcatgcttttgaagtaggaactatttcttatttgtatattcttttgcttgttgcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAGCTGGCATTCCGGTTACTTTAATCCTGGATTCTGGTGTAGGCTATATGAT

Basic information

species Physcomitrella patens
transcript PP1S96_37V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162190305|gb|FC366463.1|FC366463
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCCGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|208400609|gb|DC904585.1|DC904585
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAG-CCTGACAATACAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAG
EST: gi|37847901|gb|BJ605909.1|BJ605909
EST:     TGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: TGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|208397989|gb|DC920721.1|DC920721
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|37852566|gb|BJ610574.1|BJ610574
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|208394905|gb|DC920192.1|DC920192
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|208373028|gb|DC948793.1|DC948793
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|208360788|gb|DC946484.1|DC946484
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|208370080|gb|DC948147.1|DC948147
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|18332816|gb|BJ164829.1|BJ164829
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|208353378|gb|DC918476.1|DC918476
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|208352201|gb|DC906304.1|DC906304
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCTGACAATACAGGTGCAA-GGTGGCAATNGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|162190304|gb|FC366462.1|FC366462
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCCGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|67698107|gb|BJ958340.1|BJ958340
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|37822729|gb|BJ580795.1|BJ580795
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
EST: gi|208394901|gb|DC920188.1|DC920188
EST:     GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAG                         AAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG
genomic: GCTGAAACTGGCGGCATCAAATGGGAAACATTTCAACGTCATTTGCACAGgtgccaacaa ... gcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaagtaggaactatttcttatttgtatattcttttgcttgttgcctctacagAAGGAAGGCCTGACAATACAGGTGCAAAGGTGGCAATTGAGCTACTAGCAGCTGGCATTCCGGTTACTTTAATCCTGGATTCTGGTGTAGGCTATATGAT
                                           ttgcctct  CT-rich tract
           aactatttcttatttg  TA-rich tract