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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtctaaatgccgacagtctgttgcgtttactgaatagtttggataatactaaccttacaggtccaaatttgtgataagtcttgacagtctggttgggtgtatatgtgatcagGCTTGGGATGAAACCTCTATACCACTCTCTGCAGGCTGCGACCTTTTTTTGCGGTATGTCACACGAACGACTGCACTAGAGTATGAGGACATTCGGGCTG

Basic information

species Physcomitrella patens
transcript PP1S96_37V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162190305|gb|FC366463.1|FC366463
EST:     CTATGATGGGTCTCGAGATTGAGCTCAAGAACGCCTCAGAGGCCCTCAAG                         GCTTGGGATGAAACCTCTATACCACTCTCTGCAGGCTGCGACCNNNNNNNG
genomic: CTATGATGGGTCTCGAGATTGAGCTCAAGAACGCCTCAGAGGCCCTCAAGgtgcgtctaa ... atgtgatcagGCTTGGGATGAAACCTCTATACCACTCTCTGCAGGCTGCGACCTTTTTTTG
EST: gi|208359160|gb|DC934663.1|DC934663
EST:     CTATGATGGGTCTCGAGATTGAGCTCAAGAACGCCTCAGAGGCCCTCAAG                         GCTTGGGATGAAACCTCTATACCACTCTCTGCAGGCTGCGACCNNNNNNNG
genomic: CTATGATGGGTCTCGAGATTGAGCTCAAGAACGCCTCAGAGGCCCTCAAGgtgcgtctaa ... atgtgatcagGCTTGGGATGAAACCTCTATACCACTCTCTGCAGGCTGCGACCTTTTTTTG
EST: gi|208400609|gb|DC904585.1|DC904585
EST:     CTATGATGGGTCTCGAGATTGAGCTCAAGAACGCCTCAGAGGCCCTCAAG                         GCTTGGGATGAAACCTCTATACCACTCTCTGCAGGCTGCGACCNNNNNNNG
genomic: CTATGATGGGTCTCGAGATTGAGCTCAAGAACGCCTCAGAGGCCCTCAAGgtgcgtctaa ... atgtgatcagGCTTGGGATGAAACCTCTATACCACTCTCTGCAGGCTGCGACCTTTTTTTG
EST: gi|18367417|gb|BJ199500.1|BJ199500
EST:     CTATGATGGGTCTCGAGATTGAGCTCAAGAACGCCTCANAGGCCCTCAAG                         GCTTGGGATGAAACCTCTATACCACTCTCTGCAGG
genomic: CTATGATGGGTCTCGAGATTGAGCTCAAGAACGCCTCAGAGGCCCTCAAGgtgcgtctaa ... atgtgatcagGCTTGGGATGAAACCTCTATACCACTCTCTGCAGG
EST: gi|208374643|gb|DC931982.1|DC931982
EST:     CTATGATGGGTCTCGAGATTGAGCTCAAGAACGCCTCAGAGGCCCTCAAG                         GCTTGGGATGAAACCTCTATACCACTCTCTGCAGGCTGCGACCNNNNNNNG
genomic: CTATGATGGGTCTCGAGATTGAGCTCAAGAACGCCTCAGAGGCCCTCAAGgtgcgtctaa ... atgtgatcagGCTTGGGATGAAACCTCTATACCACTCTCTGCAGGCTGCGACCTTTTTTTG
EST: gi|208352201|gb|DC906304.1|DC906304
EST:     CTATGATGGGTCTCGAGATTGAGCTCAAGAACGCCTCAGAGGCCCTCAAG                         GCTTGGGATGAAACCTCTATACCACTCTCTGCAGGCTGCGACCNNNNNNNG
genomic: CTATGATGGGTCTCGAGATTGAGCTCAAGAACGCCTCAGAGGCCCTCAAGgtgcgtctaa ... atgtgatcagGCTTGGGATGAAACCTCTATACCACTCTCTGCAGGCTGCGACCTTTTTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caggtccaaatttgtgataagtcttgacagtctggttgggtgtatatgtgatcagGCTTGGGATGAAACCTCTATACCACTCTCTGCAGGCTGCGACCTTTTTTTGCGGTATGTCACACGAACGACTGCACTAGAGTATGAGGACATTCGGGCTG
                     tcttgac  putative branch site (score: 3)
       aaatttgt  TA-rich tract