1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccacatgctaaagtaactatgttgtaacccgagtcttttgaaagttgcgctgtcctttctcatgctttctgaggcaattgcgtgatgattggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGACCATGGTGATTCTTCCTTCAGCGTAATCGAAGAGTTCAATTACTGGCGTA
species | Physcomitrella patens |
transcript | PP1S96_37V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG GCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGACEST: gi|208359160|gb|DC934663.1|DC934663
genomic: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAGgtgagaagct ... ggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
EST: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG GCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGACEST: gi|208400609|gb|DC904585.1|DC904585
genomic: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAGgtgagaagct ... ggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
EST: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG GCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGACEST: gi|18367417|gb|BJ199500.1|BJ199500
genomic: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAGgtgagaagct ... ggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
EST: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG GCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGACEST: gi|208374643|gb|DC931982.1|DC931982
genomic: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAGgtgagaagct ... ggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
EST: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG GCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGACEST: gi|208352201|gb|DC906304.1|DC906304
genomic: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAGgtgagaagct ... ggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
EST: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAG GCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
genomic: GAGAATCTGCGAAGGTTGCAGGAGGCGTCACCTTCGAATGGCTAAGACAGgtgagaagct ... ggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccacatgctaaagtaactatgttgtaacccgagtcttttgaaagttgcgctgtcctttctcatgctttctgaggcaattgcgtgatgattggggactcagGCTGAAGACGCAAGTTTACTGACAACTCCGGCGCGTCCTACTGCTACTGACCATGGTGATTCTTCCTTCAGCGTAATCGAAGAGTTCAATTACTGGCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA