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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTGGAACATTCAACTCAACGCAGTCTCGGTAGTGAACTTGGTCATGTCCATCGGCATCGCAGTTGAATTCTGTGTTCATATCACTCATGCATTCACCgtaagcaatttctcaatctcaataaagctgttgtaagcgagtttccttttgattatcaataaccaaatgtcaagttctgcagatgacagtacccgctttg...

Basic information

species Physcomitrella patens
transcript PP1S96_146V6.2
intron # 34
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S96_146V6.1 (Physcomitrella patens), 5'ss of exon 34
lower sequence: LOC_Os04g47590.1 (Oryza sativa), 5'ss of exon 34
CTTGTGGAACATTCAACTCAACGCAGTCTCGGTAGTGAACTTGGTCATGTCCATCGGCATCGCAGTTGAATTCTGTGTTCATATCACTCATGCATTCACCgtaagcaatttctcaatctcaataaagctgttgtaagcga-gtttccttttgatta---tcaataaccaaatgtcaagttctgcagatgacagtacccgctttg
  |      |||||| ||||| ||| | ||  | || ||| | || ||||| || || || || ||||||||||||||||||||||| ||||| ||||  ||| |    || | ||| |  |     | ||| |||   |  |||   | ||  |    ||  | |  |  ||  ||||  |||   |      |   |||   
TATCCTTGGCATTCAGCTCAATGCAATTTCTATTGTAAACCTTGTTATGTCAATAGGAATTGCTGTTGAATTCTGTGTTCATATCACACATGCCTTCATGgtaggttcgttgtaaatttggaatttccagttctaaaatatattttagtatgtctgagttctgtgattatttggaaagtgttgcccttagtca-agatgct---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100430637|gb|BY978320.1|BY978320
EST:     CCATCGGCATCGCAGTTGAATTCTGTGTTCATATCACTCATGCATTCACC                         ATGACTACGGGATACAAGCAAGACAGAGCAAGCAAGG
genomic: CCATCGGCATCGCAGTTGAATTCTGTGTTCATATCACTCATGCATTCACCgtaagcaatt ... ttttatgcagATGACTACGGGATACAAGCAAGACAGAGCAAGCAAGG
EST: gi|162271359|gb|FC446932.1|FC446932
EST:     CCATCGGCATCGCAGTTGAATTCTGTGTTCATATCACTCATGCATTCACC                         ATGACTACGGGATACAAGCAAGACAGAGCAAGCAAGGCTCTTGTCATCATG
genomic: CCATCGGCATCGCAGTTGAATTCTGTGTTCATATCACTCATGCATTCACCgtaagcaatt ... ttttatgcagATGACTACGGGATACAAGCAAGACAGAGCAAGCAAGGCTCTTGTCATCATG
EST: gi|162271360|gb|FC446933.1|FC446933
EST:     CCATCGGCATCGCAGTTGAATTCTGTGTTCATATCACTCATGCATTCACC                         ATGACTACGGGATACAAGCAAGACAGAGCAAGCAAGGCTCTTGTCATCATG
genomic: CCATCGGCATCGCAGTTGAATTCTGTGTTCATATCACTCATGCATTCACCgtaagcaatt ... ttttatgcagATGACTACGGGATACAAGCAAGACAGAGCAAGCAAGGCTCTTGTCATCATG