Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   		33  
 5'  3'   		34  
 5'  3'   		35  
 5'  3'   		36  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttggtattcagcatatgacatttctgcttcctccaattcacacctctgtctgtgtacccttgagattgggtattcctaatatttagatgtttgtgcagTGTTTTTTGCAATCAGATCTTCTGGAAGGAAGACCATCAACTGAACAGTTTCAGGCCAAATTACCATGGTTTCTGGCCGCTCTTCCATCCGCGGACTGTG

Basic information

species Physcomitrella patens
transcript PP1S96_146V6.2
intron # 27
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162184004|gb|FC359374.1|FC359374
EST:     CTGAAGGCGAAGAGTGTGGATTCGGAGATACATGCAGTGAATGCACAACG                         TGTTTTTTGCAATCAGATCTTCTGGAAGGAAGACCATCAACTGAACAGTTT
genomic: CTGAAGGCGAAGAGTGTGGATTCGGAGATACATGCAGTGAATGCACAACGgtatctgaac ... gtttgtgcagTGTTTTTTGCAATCAGATCTTCTGGAAGGAAGACCATCAACTGAACAGTTT
EST: gi|100430637|gb|BY978320.1|BY978320
EST:     CTGAAGGCGAAGAGTGTGGATTCGGAGATACATGCAGTGAATGCACAACG                         TGTTTTTTGCAATCAGATCTTCTGGAAGGAAGACCATCAACTGAACAGTTT
genomic: CTGAAGGCGAAGAGTGTGGATTCGGAGATACATGCAGTGAATGCACAACGgtatctgaac ... gtttgtgcagTGTTTTTTGCAATCAGATCTTCTGGAAGGAAGACCATCAACTGAACAGTTT
EST: gi|100389697|gb|BY952503.1|BY952503
EST:     CTGAAGGCGAAGAGTGTGGATTCGGAGATACATGCAGTGAATGCACAACG                         TGTTTTTTGCAATCAGATCTTCTGGAAGGAAGACCATCAACTGAACAGTTT
genomic: CTGAAGGCGAAGAGTGTGGATTCGGAGATACATGCAGTGAATGCACAACGgtatctgaac ... gtttgtgcagTGTTTTTTGCAATCAGATCTTCTGGAAGGAAGACCATCAACTGAACAGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctgtctgtgtacccttgagattgggtattcctaatatttagatgtttgtgcagTGTTTTTTGCAATCAGATCTTCTGGAAGGAAGACCATCAACTGAACAGTTTCAGGCCAAATTACCATGGTTTCTGGCCGCTCTTCCATCCGCGGACTGTG
                              tcctaat  putative branch site (score: 2)
                                 taatatttagatgttt  TA-rich tract