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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacttgtgatttttacagcggtgtctttggaggctggcttttacgatggttgattgggttgttttattgttttaaaaagtaccttgtggatggttttaatccagtagtgttgacattttgacaccgcagTGTTATATAAATGGCAACAAGCGATACCCAAGAGTAATTTCTTGGCAGTGAAGCTTGGTTCTTTTTTCGGTTTCTTCTACACCGTGTTAGTGCTCAACTT

Basic information

species Physcomitrella patens
transcript PP1S61_93V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19788935|gb|BQ041007.1|BQ041007
EST:     ATACTTACTCTTCTTCGTCAACAGCGCGCTCATGATCGCTGGCGCTCGAG                         TGTTATATAAATGGCAACAAGCGATACCCAAGAGTAATTTCTTGGCAGTGA
genomic: ATACTTACTCTTCTTCGTCAACAGCGCGCTCATGATCGCTGGCGCTCGAGgtacacttgt ... gacaccgcagTGTTATATAAATGGCAACAAGCGATACCCAAGAGTAATTTCTTGGCAGTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagtaccttgtggatggttttaatccagtagtgttgacattttgacaccgcagTGTTATATAAATGGCAACAAGCGATACCCAAGAGTAATTTCTTGGCAGTGAAGCTTGGTTCTTTTTTCGGTTTCTTCTACACCGTGTTAGTGCTCAACTT
                                         ttttgac  putative branch site (score: 3)
                   ttttaat  TA-rich tract