1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tagaagaattatgaggttttgtcagagattgttatgtgacttgaccctcatttaagggttactgactccgtgacacgttttaatgcgatgaatcgaccagGATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACCAGGATGGGTTGATCAAGGACGGGGATTCCCTTCGGGAAGCCCAGAAGAA
species | Physcomitrella patens |
transcript | PP1S61_93V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG GATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAAEST: gi|67716630|gb|BJ966890.1|BJ966890
genomic: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTGgtgcgtcttt ... aatcgaccagGATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAA
EST: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG GATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACCEST: gi|100356202|gb|BY946246.1|BY946246
genomic: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTGgtgcgtcttt ... aatcgaccagGATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACC
EST: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG GATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACCEST: gi|162256535|gb|FC432845.1|FC432845
genomic: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTGgtgcgtcttt ... aatcgaccagGATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACC
EST: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG GATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACCEST: gi|18374952|gb|BJ206530.1|BJ206530
genomic: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTGgtgcgtcttt ... aatcgaccagGATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACC
EST: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG GATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACEST: gi|100434029|gb|BY978931.1|BY978931
genomic: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTGgtgcgtcttt ... aatcgaccagGATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAAC
EST: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG GATCCATGATGGTGTTGACGCTGAAAGGTCACGTCAGCGGCTTTTAACTAC
genomic: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTGgtgcgtcttt ... aatcgaccagGATCCATGATGGTGTTGACGCTGAA-GGTCACGTCAGCAGCCTTTAACTAC
cctcatttaagggttactgactccgtgacacgttttaatgcgatgaatcgaccagGATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACCAGGATGGGTTGATCAAGGACGGGGATTCCCTTCGGGAAGCCCAGAAGAA
ttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaagaattatgaggttttgtcagagattgttatgtgacttgaccctcatttaagggttactgactccgtgacacgttttaatgcgatgaatcgaccagGATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACCAGGATGGGTTGATCAAGGACGGGGATTCCCTTCGGGAAGCCCAGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG