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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacttctaaatcataatagaagaaaaaagcctccgtttgggtatatggatttgtttatgcctactggacggatgaataagtatggcttagtgtgttgcagCCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG

Basic information

species Physcomitrella patens
transcript PP1S61_93V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18361424|gb|BJ193490.1|BJ193490
EST:     ATGTGCGGGGTGGTCTCTGCCATCTTCGCCTTCGGGTTCCTTGTGTATTG                         CCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCA
genomic: ATGTGCGGGGTGGTCTCTGCCATCTTCGCCTTCGGGTTCCTTGTGTATTGgtaagtaccc ... tgtgttgcagCCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCA
EST: gi|67716630|gb|BJ966890.1|BJ966890
EST:     ATGTGCGGGGTGGTCTCTGCCATCTTCGCCTTCGGGTTCCTTGTGTATTG                         CCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCA
genomic: ATGTGCGGGGTGGTCTCTGCCATCTTCGCCTTCGGGTTCCTTGTGTATTGgtaagtaccc ... tgtgttgcagCCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCA
EST: gi|100356202|gb|BY946246.1|BY946246
EST:     ATGTGCGGGGTGGTCTCTGCCATCTTCGCCTTCGGGTTCCTTGTGTATTG                         CCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCA
genomic: ATGTGCGGGGTGGTCTCTGCCATCTTCGCCTTCGGGTTCCTTGTGTATTGgtaagtaccc ... tgtgttgcagCCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCA
EST: gi|162256535|gb|FC432845.1|FC432845
EST:     ATGTGCGGGGTGGTCTCTGCCATCTTCGCCTTCGGGTTCCTTGTGTATTG                         CCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCA
genomic: ATGTGCGGGGTGGTCTCTGCCATCTTCGCCTTCGGGTTCCTTGTGTATTGgtaagtaccc ... tgtgttgcagCCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCA
EST: gi|18374952|gb|BJ206530.1|BJ206530
EST:     ATGTGCGGGGTGGTCTCTGCCATCTTCGCCTTCGGGTTCCTTGTGTATTG                         CCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCA
genomic: ATGTGCGGGGTGGTCTCTGCCATCTTCGCCTTCGGGTTCCTTGTGTATTGgtaagtaccc ... tgtgttgcagCCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCA
EST: gi|100434029|gb|BY978931.1|BY978931
EST:     ATGTGCGGGGTGGTCTCTGCCATCTTCGCCTTCGGGTTCCTTGTGTATTG                         CCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCA
genomic: ATGTGCGGGGTGGTCTCTGCCATCTTCGCCTTCGGGTTCCTTGTGTATTGgtaagtaccc ... tgtgttgcagCCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatttgtttatgcctactggacggatgaataagtatggcttagtgtgttgcagCCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG
                             aataagtat  TA-rich tract