Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCACAGAATGTTGATATTCTCAACGTAGAGCTGGCTACAAGTGCAGCAGAGATTCCCAAGTATTGGAACATTCATGTGAGCGTGTGGCTGCGTCATTgtatcctcattcaccaattgaagttttttgttgaatgcccgttatgttatttgggcttcgtgagagttgacgtgtatggattgctttcccccttcgattactcgaggtgagaagtttgtggttttcttagcttcgtttattacag

Basic information

species Physcomitrella patens
transcript PP1S61_93V6.1
intron # 4
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19788935|gb|BQ041007.1|BQ041007
EST:     AGAGATTCCCAAGTATTGGAACATTCATGTGAGCGTGTGGCTGCGTCATT                         ATGTCTATGAAAGATTGGTGGTGAAAGGGAGGAGACCCGGTTTCCGGCAGC
genomic: AGAGATTCCCAAGTATTGGAACATTCATGTGAGCGTGTGGCTGCGTCATTgtatcctcat ... tttattacagATGTCTATGAAAGATTGGTGGTGAAAGGGAGGAGACCCGGTTTCCGGCAGC