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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcatacactttcccctcgcggcaatgcttgtcgtgtacttggaacgtcttgaatgattgtccctctgctttaattcaatagtgagacacactgagcgaataattaacgttgacgctcgtttatgcagGGATTGTACACTGGATACTTACTCTTCTTCGTCAACAGCGCGCTCATGATCGCTGGCGCTCGAG

Basic information

species Physcomitrella patens
transcript PP1S61_93V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19788935|gb|BQ041007.1|BQ041007
EST:     CCGGTTTCCGGCAGCTCCTCGCCACACAAGTCGTGAGCGCCATCTGGCAT                         GGATTGTACACTGGATACTTACTCTTCTTCGTCAACAGCGCGCTCATGATC
genomic: CCGGTTTCCGGCAGCTCCTCGCCACACAAGTCGTGAGCGCCATCTGGCATgtaagtgcat ... gtttatgcagGGATTGTACACTGGATACTTACTCTTCTTCGTCAACAGCGCGCTCATGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcaatagtgagacacactgagcgaataattaacgttgacgctcgtttatgcagGGATTGTACACTGGATACTTACTCTTCTTCGTCAACAGCGCGCTCATGATCGCTGGCGCTCGAG
                                          ctcgttt  CT-rich tract
                         aataattaa  TA-rich tract