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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACGTAATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTGgtgcgtctttgctttccgcactgctaatggtagtaactgccaaaatttattgagccatgctctgctgtggcgctgataagatccttaacttctagttagt...

Basic information

species Physcomitrella patens
transcript PP1S61_93V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18361424|gb|BJ193490.1|BJ193490
EST:     AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG                         GATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAA
genomic: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTGgtgcgtcttt ... aatcgaccagGATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAA
EST: gi|67716630|gb|BJ966890.1|BJ966890
EST:     AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG                         GATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACC
genomic: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTGgtgcgtcttt ... aatcgaccagGATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACC
EST: gi|100356202|gb|BY946246.1|BY946246
EST:     AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG                         GATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACC
genomic: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTGgtgcgtcttt ... aatcgaccagGATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACC
EST: gi|162256535|gb|FC432845.1|FC432845
EST:     AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG                         GATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACC
genomic: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTGgtgcgtcttt ... aatcgaccagGATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAACTACC
EST: gi|18374952|gb|BJ206530.1|BJ206530
EST:     AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG                         GATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAAC
genomic: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTGgtgcgtcttt ... aatcgaccagGATCCATGATGGTGTTGACGCTGAAGGTCACGTCAGCAGCCTTTAAC
EST: gi|100434029|gb|BY978931.1|BY978931
EST:     AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTG                         GATCCATGATGGTGTTGACGCTGAAAGGTCACGTCAGCGGCTTTTAACTAC
genomic: AATGTTCATGAGTGGCGATGCTTGGAAAAGCGGCGGCATCGACCATACTGgtgcgtcttt ... aatcgaccagGATCCATGATGGTGTTGACGCTGAA-GGTCACGTCAGCAGCCTTTAACTAC