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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggacgtttttgattagaagtgtatatatttccaattatttgatatctaactgttggattttgtaacttcttgtactaattcttcatatttcgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAGGAATTAAGGTTAAAGGACAGCTTTTAGGTTAAAAGTTTTTCCTTCTCTG

Basic information

species Physcomitrella patens
transcript PP1S61_124V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67700563|gb|BJ960796.1|BJ960796
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208370975|gb|DC944350.1|DC944350
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208366029|gb|DC951124.1|DC951124
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208399308|gb|DC916621.1|DC916621
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208370558|gb|DC951594.1|DC951594
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208358614|gb|DC949949.1|DC949949
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|15261170|gb|BI436480.1|BI436480
EST:     GAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208370450|gb|DC952153.1|DC952153
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208370762|gb|DC948271.1|DC948271
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGGCGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208351242|gb|DC921549.1|DC921549
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208365172|gb|DC947352.1|DC947352
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208385741|gb|DC952902.1|DC952902
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208389602|gb|DC945826.1|DC945826
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|67691673|gb|BJ951906.1|BJ951906
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208393558|gb|DC949720.1|DC949720
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208384193|gb|DC919679.1|DC919679
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208396517|gb|DC915829.1|DC915829
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTCTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208389378|gb|DC953216.1|DC953216
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208389174|gb|DC945750.1|DC945750
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAT
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208355255|gb|DC949791.1|DC949791
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208348899|gb|DC921671.1|DC921671
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208388748|gb|DC953482.1|DC953482
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGTCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208368721|gb|DC947954.1|DC947954
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|162206887|gb|FC382749.1|FC382749
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208373226|gb|DC945166.1|DC945166
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|37845977|gb|BJ603985.1|BJ603985
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|15728041|gb|BI740590.1|BI740590
EST:     AAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: AAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208381467|gb|DC919469.1|DC919469
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208392762|gb|DC953659.1|DC953659
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGTCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208367375|gb|DC951293.1|DC951293
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208367870|gb|DC950951.1|DC950951
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208365476|gb|DC954717.1|DC954717
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208369168|gb|DC956043.1|DC956043
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208388577|gb|DC953395.1|DC953395
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208353508|gb|DC946330.1|DC946330
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208358599|gb|DC946560.1|DC946560
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTCTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208388861|gb|DC945437.1|DC945437
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|162209010|gb|FC385562.1|FC385562
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208397452|gb|DC916364.1|DC916364
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
EST: gi|208359478|gb|DC954031.1|DC954031
EST:     GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAG                         TACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG
genomic: GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 29 (upstream exon), 33 (downstream exon)
Score: 11

GCTGATGTTACTGGTGAAGTTGAGAAAGTTTTGTGGGAAGACGGAGgtatttgatc ... cgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAGGAATTAAGGTTAAAGGACAGCTTTTAGGTTAAAAGTTTTTCCTTCTCTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaactgttggattttgtaacttcttgtactaattcttcatatttcgtgctgcagTACCCGTCGGGTATGGAGATCCTTTGATTGCCGTCAAGCCATCATTCCCAGGAATTAAGGTTAAAGGACAGCTTTTAGGTTAAAAGTTTTTCCTTCTCTG
                           tactaat  putative branch site (score: 11)
                              taattcttcatattt  TA-rich tract