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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcagcattctatgcatcttcctatggcaatcttttttctgtttttgcccccccctcgcgaatggttcgtcctgtttttggcattggctctagtggggagctgattagtggggagccgtatttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA

Basic information

species Physcomitrella patens
transcript PP1S61_124V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208351699|gb|DC905792.1|DC905792
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208372079|gb|DC940261.1|DC940261
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208390736|gb|DC937892.1|DC937892
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208388092|gb|DC941717.1|DC941717
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208370812|gb|DC936878.1|DC936878
EST:     AAGTTGTGGAGGAANAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCNAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208362082|gb|DC943509.1|DC943509
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208366663|gb|DC931320.1|DC931320
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208373019|gb|DC940650.1|DC940650
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208374802|gb|DC932057.1|DC932057
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208376397|gb|DC902722.1|DC902722
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208351242|gb|DC921549.1|DC921549
EST:     CCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: CCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208370655|gb|DC936143.1|DC936143
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208359418|gb|DC939143.1|DC939143
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208363163|gb|DC931243.1|DC931243
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208392593|gb|DC938558.1|DC938558
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208389602|gb|DC945826.1|DC945826
EST:     CAGTGCC-TTGAG                         GTTC-AAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: CAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|162206888|gb|FC382750.1|FC382750
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208393558|gb|DC949720.1|DC949720
EST:     GGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: GGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208390017|gb|DC938072.1|DC938072
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208391566|gb|DC933815.1|DC933815
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208379033|gb|DC907782.1|DC907782
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|100381223|gb|BY950033.1|BY950033
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208389174|gb|DC945750.1|DC945750
EST:     AGAAGAAGAGAA-CCCNTGATTCCCAGTGCC-TTGA-                         GNTCAAAATCTCCTTATGCANGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208375388|gb|DC940470.1|DC940470
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208348899|gb|DC921671.1|DC921671
EST:     CCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCANGTNTGCGATGAGACATCGAACATTTCCGAG
genomic: CCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208368418|gb|DC935983.1|DC935983
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|67508453|gb|BJ941320.1|BJ941320
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208371473|gb|DC931824.1|DC931824
EST:     AAGTTGTGGAGGAAGAAGAANAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208357929|gb|DC943055.1|DC943055
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|100421493|gb|BY976210.1|BY976210
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCTTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTTCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208354291|gb|DC902491.1|DC902491
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|67577689|gb|BJ949856.1|BJ949856
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208370095|gb|DC940388.1|DC940388
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208381467|gb|DC919469.1|DC919469
EST:     CAGTGCC-TTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: CAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208388161|gb|DC933211.1|DC933211
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208348429|gb|DC905587.1|DC905587
EST:     AAGTTGTGGAGGAANAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|100392763|gb|BY971872.1|BY971872
EST:     AGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTTCCAA
genomic: AGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGT-GCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTT-CCGA
EST: gi|18363375|gb|BJ195447.1|BJ195447
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208367375|gb|DC951293.1|DC951293
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208367055|gb|DC935911.1|DC935911
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208367870|gb|DC950951.1|DC950951
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|100397327|gb|BY972443.1|BY972443
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208355366|gb|DC929813.1|DC929813
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208369168|gb|DC956043.1|DC956043
EST:     CCAGTGCC-TTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: CCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|100451122|gb|CJ974608.1|CJ974608
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208388577|gb|DC953395.1|DC953395
EST:     GAGGNAGAAGAAGAG-ANCCCNTGANTCCCAGTG-CNTTGA-                         GNTC-AAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: GAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
EST: gi|208373391|gb|DC941030.1|DC941030
EST:     AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAG                         GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG
genomic: AAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 15 (upstream exon), 35 (downstream exon)
Score: 6

TGAGTTCGTGACAGAAGAATCCGAGGTTTTGGATGCGGAGGAGGTCGAAGAAGTTGTGGAGGAAGAAGAAGAGAACCCCTTGATTCCCAGTGCCTTTGAGgtatcagcat ... atttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttggcattggctctagtggggagctgattagtggggagccgtatttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA
                        agctgat  putative branch site (score: 6)
                                            tatttgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatcagcattctatgcatcttcctatggcaatcttttttctgtttttgcccccccctcgcgaatggttcgtcctgtttttggcattggctctagtggggagctgattagtggggagccgtatttgtacagGTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG