1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gacatatacatgtggttccgtgctccaaaaagttgtgagtgggatgtcgagagatcatgttacctcactaatttgtgcacttgctttgctatttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCACGCAACAACCTGTAGAG
species | Physcomitrella patens |
transcript | PP1S61_124V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAAGGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208366029|gb|DC951124.1|DC951124
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208399308|gb|DC916621.1|DC916621
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208362082|gb|DC943509.1|DC943509
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208370558|gb|DC951594.1|DC951594
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTACAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208358614|gb|DC949949.1|DC949949
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208370450|gb|DC952153.1|DC952153
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208370762|gb|DC948271.1|DC948271
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208351242|gb|DC921549.1|DC921549
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208365172|gb|DC947352.1|DC947352
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208385741|gb|DC952902.1|DC952902
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208389602|gb|DC945826.1|DC945826
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|162206888|gb|FC382750.1|FC382750
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: AGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTEST: gi|208393558|gb|DC949720.1|DC949720
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATT
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208384193|gb|DC919679.1|DC919679
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208396517|gb|DC915829.1|DC915829
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208389378|gb|DC953216.1|DC953216
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208389174|gb|DC945750.1|DC945750
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208355255|gb|DC949791.1|DC949791
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208348899|gb|DC921671.1|DC921671
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208388748|gb|DC953482.1|DC953482
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAGATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208368721|gb|DC947954.1|DC947954
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|162206887|gb|FC382749.1|FC382749
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208373226|gb|DC945166.1|DC945166
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|37845977|gb|BJ603985.1|BJ603985
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208381467|gb|DC919469.1|DC919469
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208392762|gb|DC953659.1|DC953659
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAGATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208367375|gb|DC951293.1|DC951293
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208367870|gb|DC950951.1|DC950951
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208365476|gb|DC954717.1|DC954717
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208369168|gb|DC956043.1|DC956043
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208388577|gb|DC953395.1|DC953395
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208353508|gb|DC946330.1|DC946330
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208358599|gb|DC946560.1|DC946560
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208388861|gb|DC945437.1|DC945437
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208397452|gb|DC916364.1|DC916364
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCEST: gi|208359478|gb|DC954031.1|DC954031
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
EST: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG GGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
genomic: GGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAGgtatcctcaa ... atttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGC
gtcgagagatcatgttacctcactaatttgtgcacttgctttgctatttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCACGCAACAACCTGTAGAG
cactaat putative branch site (score: 12)
ctttgctatttcctc putative PPT
actaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacatatacatgtggttccgtgctccaaaaagttgtgagtgggatgtcgagagatcatgttacctcactaatttgtgcacttgctttgctatttcctcagGGACAAATAGTTAAGGAGGGTCAAGTGGTGTGCTATTTGGAGCAGCTCGGCACGCAACAACCTGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - tgctcca