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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcgaagctgtaatgttgagtttagtaaggttcattgcgacttgaagaagtccttggttctgcatgcatcacttatgtttttgtacttgttgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG

Basic information

species Physcomitrella patens
transcript PP1S61_124V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208351699|gb|DC905792.1|DC905792
EST:     TCATAAAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAANGG-CGAACCGTGAAGGGTAAAAGTGGTCCTCC-
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208370975|gb|DC944350.1|DC944350
EST:     TCATAGAAGCAGCTACTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAGGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208390736|gb|DC937892.1|DC937892
EST:     TCATANAANCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGNAAAGGGCGAAC
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAAC
EST: gi|208366029|gb|DC951124.1|DC951124
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208388092|gb|DC941717.1|DC941717
EST:     TCATANAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCA
EST: gi|208399308|gb|DC916621.1|DC916621
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208362082|gb|DC943509.1|DC943509
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208370558|gb|DC951594.1|DC951594
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTACAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208366663|gb|DC931320.1|DC931320
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAA-GTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208358614|gb|DC949949.1|DC949949
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208370450|gb|DC952153.1|DC952153
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTACATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208373019|gb|DC940650.1|DC940650
EST:     TCATANAANCAGCTGCTGATGCAGGATNGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAG-AAANGGCGAACCGTGAA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAA
EST: gi|208374802|gb|DC932057.1|DC932057
EST:     TCATAAAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCA
EST: gi|208370762|gb|DC948271.1|DC948271
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208351242|gb|DC921549.1|DC921549
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208370655|gb|DC936143.1|DC936143
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTC
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTT-CAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTC
EST: gi|208359418|gb|DC939143.1|DC939143
EST:     TCATANAAGCAGCTGCTGATGCAGGATTGCTTTACATTACCTCACCAAAG                         GTGGGTCTCTTCAGNAAAGGGCGAACC
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACC
EST: gi|208363163|gb|DC931243.1|DC931243
EST:     TCATANAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAANGGTAAAANTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208365172|gb|DC947352.1|DC947352
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208392593|gb|DC938558.1|DC938558
EST:     TCATANAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTT
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTT
EST: gi|208385741|gb|DC952902.1|DC952902
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208389602|gb|DC945826.1|DC945826
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|162206888|gb|FC382750.1|FC382750
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAAGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208393558|gb|DC949720.1|DC949720
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208390017|gb|DC938072.1|DC938072
EST:     TCATAAAANCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACC
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACC
EST: gi|208384193|gb|DC919679.1|DC919679
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208396517|gb|DC915829.1|DC915829
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|100381223|gb|BY950033.1|BY950033
EST:     CATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCCTCAC-AAAG                         GTGGGTCTCTTTCAGGAA-GGGCGAACCGTGAAGG
genomic: CATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACC-TCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTT-CAGGAAAGGGCGAACCGTGAAGG
EST: gi|208389378|gb|DC953216.1|DC953216
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208389174|gb|DC945750.1|DC945750
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208375388|gb|DC940470.1|DC940470
EST:     TCATAGAANCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACNAAAG                         GTGGGTCTCTTCAGNAA-GGGCGAACC
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACC
EST: gi|208355255|gb|DC949791.1|DC949791
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208348899|gb|DC921671.1|DC921671
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208371473|gb|DC931824.1|DC931824
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGNAANGG-CGAACNGTGAANGGTAA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAA
EST: gi|208357929|gb|DC943055.1|DC943055
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGG-CGAACCGTGAANGGTAAA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAA
EST: gi|208388748|gb|DC953482.1|DC953482
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208368721|gb|DC947954.1|DC947954
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208354291|gb|DC902491.1|DC902491
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAA-GTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|162206887|gb|FC382749.1|FC382749
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208373226|gb|DC945166.1|DC945166
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|37845977|gb|BJ603985.1|BJ603985
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208381467|gb|DC919469.1|DC919469
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208392762|gb|DC953659.1|DC953659
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208388161|gb|DC933211.1|DC933211
EST:     TCATANAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGA
EST: gi|208367375|gb|DC951293.1|DC951293
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208367870|gb|DC950951.1|DC950951
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208365476|gb|DC954717.1|DC954717
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208355366|gb|DC929813.1|DC929813
EST:     TCATANAAGCAGCTACTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAA
EST: gi|208369168|gb|DC956043.1|DC956043
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208388577|gb|DC953395.1|DC953395
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208353508|gb|DC946330.1|DC946330
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208358599|gb|DC946560.1|DC946560
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208388861|gb|DC945437.1|DC945437
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208373391|gb|DC941030.1|DC941030
EST:     TCATANAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGNAAAGGCCGAA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAA
EST: gi|208397452|gb|DC916364.1|DC916364
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
EST: gi|208359478|gb|DC954031.1|DC954031
EST:     TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAG                         GTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA
genomic: TCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 22 (upstream exon), 35 (downstream exon)
Score: 4

CAAGAAAGCCCTCTCTGGGTCGTCATTGAAGCCCGTCTCAAATTTTGGTCTCATAGAAGCAGCTGCTGATGCAGGATTGCTTTTCATTACCTCACCAAAGgtaatgcaag ... tgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaagtccttggttctgcatgcatcacttatgtttttgtacttgttgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG
                           ttatgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atcgaagctgtaatgttgagtttagtaaggttcattgcgacttgaagaagtccttggttctgcatgcatcacttatgtttttgtacttgttgaggatcagGTGGGTCTCTTCAGGAAAGGGCGAACCGTGAAGGGTAAAAGTGGTCCTCCACTCTGCGAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgca