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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggcgattaagaatgaagtttcgttcatctatttcggggctcaacgtgttcaaaagaatcattctattggctaggtttaaaagattgtcacggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCGGCTCCGAAGCCAGTTGCAGCAGGGCCTCCAGTATTGGGTAAGGCTATGG

Basic information

species Physcomitrella patens
transcript PP1S61_124V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208351699|gb|DC905792.1|DC905792
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208372079|gb|DC940261.1|DC940261
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208370975|gb|DC944350.1|DC944350
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208390736|gb|DC937892.1|DC937892
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208388092|gb|DC941717.1|DC941717
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208370812|gb|DC936878.1|DC936878
EST:     TTATGCAGGTCTGCGATGAGACATCNAACATTTCCGAGGTGCANATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAACGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208362082|gb|DC943509.1|DC943509
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208370558|gb|DC951594.1|DC951594
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208366663|gb|DC931320.1|DC931320
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208370450|gb|DC952153.1|DC952153
EST:     TTATGCAGGTTTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208373019|gb|DC940650.1|DC940650
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208374802|gb|DC932057.1|DC932057
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208376397|gb|DC902722.1|DC902722
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208351242|gb|DC921549.1|DC921549
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATG-AA                         ------------A-TTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208370655|gb|DC936143.1|DC936143
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208359418|gb|DC939143.1|DC939143
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208363163|gb|DC931243.1|DC931243
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCANTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208365172|gb|DC947352.1|DC947352
EST:     TTATGCAGGTNTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208392593|gb|DC938558.1|DC938558
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208385741|gb|DC952902.1|DC952902
EST:     TGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208389602|gb|DC945826.1|DC945826
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|162206888|gb|FC382750.1|FC382750
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208393558|gb|DC949720.1|DC949720
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208390017|gb|DC938072.1|DC938072
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTG--G--G---                         -T---T-CCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208391566|gb|DC933815.1|DC933815
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208384193|gb|DC919679.1|DC919679
EST:     GTGCAGATGAAA                         GT-GGTTCCTTCA-NTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: GTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208396517|gb|DC915829.1|DC915829
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208379033|gb|DC907782.1|DC907782
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|100381223|gb|BY950033.1|BY950033
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208389378|gb|DC953216.1|DC953216
EST:     TTATGCANGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208389174|gb|DC945750.1|DC945750
EST:     TTATGCANGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208375388|gb|DC940470.1|DC940470
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208355255|gb|DC949791.1|DC949791
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208348899|gb|DC921671.1|DC921671
EST:     TTATGCANGTNTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208368418|gb|DC935983.1|DC935983
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|67508453|gb|BJ941320.1|BJ941320
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208371473|gb|DC931824.1|DC931824
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208357929|gb|DC943055.1|DC943055
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208388748|gb|DC953482.1|DC953482
EST:     GTGCAGATGAAA                         GT-GGTTCCTTCAG-TTGCGAGT-AGGAGAGAGA-TNGCCAGCCAGCACCG
genomic: GTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|100421493|gb|BY976210.1|BY976210
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTTCGAGTTGCAGATGAAA                         GTGGGTCCCTTCAGTTTGCGAGTAGGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208368721|gb|DC947954.1|DC947954
EST:     CGAGGTGCAGATGAAA                         GT-GGTTCCTTCAG-TTGCGAGTAAGGAGAGAGATTGGCNAGCCAGCACCG
genomic: CGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208354291|gb|DC902491.1|DC902491
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|162206887|gb|FC382749.1|FC382749
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|37845977|gb|BJ603985.1|BJ603985
EST:     GAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: GAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|67577689|gb|BJ949856.1|BJ949856
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208370095|gb|DC940388.1|DC940388
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208381467|gb|DC919469.1|DC919469
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208388161|gb|DC933211.1|DC933211
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208348429|gb|DC905587.1|DC905587
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|100392763|gb|BY971872.1|BY971872
EST:     TATGCAGGTCTGCGATGAGACATCGAACATTTTCCAAGGTGCAGATGAAA                         GTGGGT-CCTTTCAGTTTGCGAGTAGGGAGAGAGATTGGCAGGCCAGCACC
genomic: TATGCAGGTCTGCGATGAGACATCGAACATTT-CCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTT-CAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACC
EST: gi|18363375|gb|BJ195447.1|BJ195447
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208367375|gb|DC951293.1|DC951293
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208367055|gb|DC935911.1|DC935911
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208367870|gb|DC950951.1|DC950951
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208365476|gb|DC954717.1|DC954717
EST:     TTATGCANGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|100397327|gb|BY972443.1|BY972443
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGCTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208355366|gb|DC929813.1|DC929813
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208369168|gb|DC956043.1|DC956043
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|100451122|gb|CJ974608.1|CJ974608
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208388577|gb|DC953395.1|DC953395
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208358599|gb|DC946560.1|DC946560
EST:     TTATGCAGGTNTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208373391|gb|DC941030.1|DC941030
EST:     TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
EST: gi|208397452|gb|DC916364.1|DC916364
EST:     NTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAA                         GTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG
genomic: TTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 31 (downstream exon)
Score: 16

GTTCAAAATCTCCTTATGCAGGTCTGCGATGAGACATCGAACATTTCCGAGGTGCAGATGAAAgtaaaatttc ... cggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCGGCTCCGAAGCCAGTTGCAGCAGGGCCTCCAGTATTGGGTAAGGCTATGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttcaaaagaatcattctattggctaggtttaaaagattgtcacggtttacagGTGGGTTCCTTCAGTTTGCGAGTAAGGAGAGAGATTGGCAAGCCAGCACCGGCTCCGAAGCCAGTTGCAGCAGGGCCTCCAGTATTGGGTAAGGCTATGG
                              tttaaaagatt  TA-rich tract