1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aggatttagttgactctagggaagggcttctattgtgccatcacttacatgcttagatttaagattgaatgcttaaggtgcttgggcatgaatgctccagGTTGTGAGGACGAGTACATCATTGAACTTGCCAACGAGGTTCGGAAGCTCTTAGGAGTGTACGAGGATGGGAGTTTGGTAGCGTTCGAGGATGGAAGTTT
species | Physcomitrella patens |
transcript | PP1S56_10V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCCAAATTACGAGTACTTGTTCCGGCTAGAAGAAGCACTTTATGAAATTG GTTGTGAGGACGAGTACATCATTGAACTTGCCAACGAGGTTCGGAAGCTCTEST: gi|208354513|gb|DC926648.1|DC926648
genomic: TCCAAATTACGAGTACTTGTTCCGGCTAGAAGAAGCACTTTATGAAATTGgtaagtcctt ... aatgctccagGTTGTGAGGACGAGTACATCATTGAACTTGCCAACGAGGTTCGGAAGCTCT
EST: TCCAAATTACGAGTACTTGTTCCGGCTAGAAGAAGCACTTTATGAAATTG GTTGTGAGGACGAGTACATCATTGAACTTGCCAACGAGGTTCGGAAGCTCTEST: gi|162155532|gb|FC331509.1|FC331509
genomic: TCCAAATTACGAGTACTTGTTCCGGCTAGAAGAAGCACTTTATGAAATTGgtaagtcctt ... aatgctccagGTTGTGAGGACGAGTACATCATTGAACTTGCCAACGAGGTTCGGAAGCTCT
EST: TCCAAATTACGAGTACTTGTTCCGGCTAGAAGAAGCACTTTATGAAATTG GTTGTGAGGACGAGTACATCATTGAACTTGCCAACGAGGTTCGGAAGCTCTEST: gi|162266992|gb|FC443054.1|FC443054
genomic: TCCAAATTACGAGTACTTGTTCCGGCTAGAAGAAGCACTTTATGAAATTGgtaagtcctt ... aatgctccagGTTGTGAGGACGAGTACATCATTGAACTTGCCAACGAGGTTCGGAAGCTCT
EST: TCCAAATTACGAGTACTTGTTCCGGCTAGAAGAAGCACTTTATGAAATTG GTTGTGAGGACGAGTACATCATTGAACTTGCCAACGAGGTTCGGAAGCTCTEST: gi|162172118|gb|FC349333.1|FC349333
genomic: TCCAAATTACGAGTACTTGTTCCGGCTAGAAGAAGCACTTTATGAAATTGgtaagtcctt ... aatgctccagGTTGTGAGGACGAGTACATCATTGAACTTGCCAACGAGGTTCGGAAGCTCT
EST: TCCAAATTACGAGTACTTGTTCCGGCTAGAAGAAGCACTTTATGAAATTG GTTGTGAGGACGAGTACATCATTGAACTTGCCAACGAGGTTCGGAAGCTCT
genomic: TCCAAATTACGAGTACTTGTTCCGGCTAGAAGAAGCACTTTATGAAATTGgtaagtcctt ... aatgctccagGTTGTGAGGACGAGTACATCATTGAACTTGCCAACGAGGTTCGGAAGCTCT
tacatgcttagatttaagattgaatgcttaaggtgcttgggcatgaatgctccagGTTGTGAGGACGAGTACATCATTGAACTTGCCAACGAGGTTCGGAAGCTCTTAGGAGTGTACGAGGATGGGAGTTTGGTAGCGTTCGAGGATGGAAGTTT
cacttac putative branch site (score: 3)
ttagatttaagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggatttagttgactctagggaagggcttctattgtgccatcacttacatgcttagatttaagattgaatgcttaaggtgcttgggcatgaatgctccagGTTGTGAGGACGAGTACATCATTGAACTTGCCAACGAGGTTCGGAAGCTCTTAGGAGTGTACGAGGATGGGAGTTTGGTAGCGTTCGAGGATGGAAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - -tacatgc