1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCCTGGACGGACGGTCACTCTTGAGCCTGAGAAAGGTGCACAGGTATCGGGCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCTgtaagttccatgacgttcaactccaagcaggaatggaatttggatttggtgttgcgcaactttcatagtgtaattcgctattcataggtgctgattcttcaactcttctctgcag
species | Physcomitrella patens |
transcript | PP1S56_10V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCT TATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTCEST: gi|208354513|gb|DC926648.1|DC926648
genomic: GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCTgtaagttcca ... ttctctgcagTATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTC
EST: GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCT TATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTCEST: gi|208357745|gb|DC902297.1|DC902297
genomic: GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCTgtaagttcca ... ttctctgcagTATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTC
EST: GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCT TATCTGGAGCTACNANAGTTTGAEST: gi|162172118|gb|FC349333.1|FC349333
genomic: GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCTgtaagttcca ... ttctctgcagTATCTGGAGCTACGAGAGTTTGA
EST: GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCT TATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTC
genomic: GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCTgtaagttcca ... ttctctgcagTATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTGGACGGACGGTCACTCTTGAGCCTGAGAAAGGTGCACAGGTATCGGGCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCTgtaagttccatgacgttcaactccaagcaggaatggaatttggatttggtgttgcgcaactttcatagtgtaattcgctattcataggtgctgattcttcaactcttctctgcag
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