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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccatgacgttcaactccaagcaggaatggaatttggatttggtgttgcgcaactttcatagtgtaattcgctattcataggtgctgattcttcaactcttctctgcagTATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTCTACACA

Basic information

species Physcomitrella patens
transcript PP1S56_10V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208397844|gb|DC916165.1|DC916165
EST:     GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCT                         TATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTC
genomic: GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCTgtaagttcca ... ttctctgcagTATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTC
EST: gi|208354513|gb|DC926648.1|DC926648
EST:     GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCT                         TATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTC
genomic: GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCTgtaagttcca ... ttctctgcagTATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTC
EST: gi|208357745|gb|DC902297.1|DC902297
EST:     GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCT                         TATCTGGAGCTACNANAGTTTGA
genomic: GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCTgtaagttcca ... ttctctgcagTATCTGGAGCTACGAGAGTTTGA
EST: gi|162172118|gb|FC349333.1|FC349333
EST:     GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCT                         TATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTC
genomic: GCTGTGCCTATCGAGTATCAGGCTATGATGCTGAACAACTAGTACTCTCTgtaagttcca ... ttctctgcagTATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatagtgtaattcgctattcataggtgctgattcttcaactcttctctgcagTATCTGGAGCTACGAGAGTTTGAGTATGACGTGCGGGCTTTCGTTGACTTCTACACA
                            tgctgat  putative branch site (score: 3)
                                  ttcttcaactcttctc  CT-rich tract
                  tattcata  TA-rich tract