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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGCCAGCAATTACTGGGGTTTTGGTGTATATTGGATCCCCAAATAGGTTGAAAAACCAGTACTATTTGGGGCCAGCTTCTCTCCAGAATATGGCTAGgtgagattttcttttttaagtttgtcggttgatagtaaaccatattagagcctctcttttttaagcgcgagcgattacatgcgtctgtttatgtgctttgttttgttttcatttcatttcatttttacacggacaagcgtagggcccgaatagctccttatcattgctgttgaacgtggcag

Basic information

species Physcomitrella patens
transcript PP1S56_10V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208397844|gb|DC916165.1|DC916165
EST:     TTGAAAAACCAGTACTATTTGGGGCCAGCTTCTCTCCAGAATATGGCTAG                         CCAAATAGCAACGGCTAGAGGTCCTGCTGGTCCAAATTACGAGTACTTGTT
genomic: TTGAAAAACCAGTACTATTTGGGGCCAGCTTCTCTCCAGAATATGGCTAGgtgagatttt ... aacgtggcagCCAAATAGCAACGGCTAGAGGTCCTGCTGGTCCAAATTACGAGTACTTGTT
EST: gi|208354513|gb|DC926648.1|DC926648
EST:     TTGAAAAACCAGTACTATTTGGGGCCAGCTTCTCTCCAGAATATGGCTAG                         CCAAATAGCAACGGCTAGAGGTCCTGCTGGTCCAAATTACGAGTACTTGTT
genomic: TTGAAAAACCAGTACTATTTGGGGCCAGCTTCTCTCCAGAATATGGCTAGgtgagatttt ... aacgtggcagCCAAATAGCAACGGCTAGAGGTCCTGCTGGTCCAAATTACGAGTACTTGTT
EST: gi|162155532|gb|FC331509.1|FC331509
EST:     TTGAAAAACCAGTACTATTTGGGGCCAGCTTCTCTCCAGAATATGGCTAG                         CCAAATAGCAACGGCTAGAGGTCCTGCTGGTCCAAATTACGAGTACTTGTT
genomic: TTGAAAAACCAGTACTATTTGGGGCCAGCTTCTCTCCAGAATATGGCTAGgtgagatttt ... aacgtggcagCCAAATAGCAACGGCTAGAGGTCCTGCTGGTCCAAATTACGAGTACTTGTT
EST: gi|162172118|gb|FC349333.1|FC349333
EST:     TTGAAAAACCAGTACTATTTGGGGCCAGCTTCTCTCCAGAATATGGCTAG                         CCAAATAGCAACGGCTAGAGGTCCTGCTGGTCCAAATTACGAGTACTTGTT
genomic: TTGAAAAACCAGTACTATTTGGGGCCAGCTTCTCTCCAGAATATGGCTAGgtgagatttt ... aacgtggcagCCAAATAGCAACGGCTAGAGGTCCTGCTGGTCCAAATTACGAGTACTTGTT