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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGAGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCGgtaagagttcattttatttatcacaacgaatctgcctctgttgtctttggctactagttgttgattcgttctgacttgtgtactgtttcataatgaacca...

Basic information

species Physcomitrella patens
transcript PP1S50_118V6.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37850877|gb|BJ608885.1|BJ608885
EST:     AGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCG                         GCTGCACATCAAGACGTGGAATTCGACTTCTTGAGATATTCTCAGCAGCGA
genomic: AGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCGgtaagagttc ... tttgtcacagGCTGCACATCAAGACGTGGAATTCGACTTCTTGAGATATTCTCAGCAGCGA
EST: gi|67695099|gb|BJ955332.1|BJ955332
EST:     AGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCG                         GCTGCACATCAAGACGTGGAATTCGACTTCTTGAGATATTCTCAGCAGCGA
genomic: AGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCGgtaagagttc ... tttgtcacagGCTGCACATCAAGACGTGGAATTCGACTTCTTGAGATATTCTCAGCAGCGA
EST: gi|208386046|gb|DC956562.1|DC956562
EST:     AGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCG                         GCTGCACATCAAGACGTGGAATTCGACTTCTTGAGATATTCTCAGCAGCGA
genomic: AGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCGgtaagagttc ... tttgtcacagGCTGCACATCAAGACGTGGAATTCGACTTCTTGAGATATTCTCAGCAGCGA
EST: gi|162272172|gb|FC448681.1|FC448681
EST:     AGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCG                         GCTGCACATCAAGACGTGGAATTCGACTTCTTGAGATATTCTCAGCAGCGA
genomic: AGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCGgtaagagttc ... tttgtcacagGCTGCACATCAAGACGTGGAATTCGACTTCTTGAGATATTCTCAGCAGCGA
EST: gi|162170654|gb|FC347150.1|FC347150
EST:     AGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCG                         GCTGCACATCAAGACGTGGAATTCGACTTCTTGAGATATTCTCAGCAGCGA
genomic: AGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCGgtaagagttc ... tttgtcacagGCTGCACATCAAGACGTGGAATTCGACTTCTTGAGATATTCTCAGCAGCGA
EST: gi|208395668|gb|DC920258.1|DC920258
EST:     AGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCG                         GCTGCACATCAAGACGTGGAATTCGACTTCTTGAGATATTCTCAGCAGCGA
genomic: AGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCGgtaagagttc ... tttgtcacagGCTGCACATCAAGACGTGGAATTCGACTTCTTGAGATATTCTCAGCAGCGA