1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgatattaagcattttatacaactcttatgtgttatcggatccttaatcatgttagttgtgatttgtattctctgacgtgcgtaaacttccccagagaaagttttatcattacatttttaatagtgttgcgctgccaacttttacgaagggaatattattggatgtggtctaaaacaggggattcag
species | Physcomitrella patens |
transcript | PP1S50_118V6.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGGGGATTCAGEST: gi|67695099|gb|BJ955332.1|BJ955332
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAG---C------TTCAGgtatttgata ... gg
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGGGGATTCAGEST: gi|208386046|gb|DC956562.1|DC956562
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAG---C------TTCAGgtatttgata ... gg
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG GEST: gi|208386046|gb|DC956562.1|DC956562
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcag-
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG GEST: gi|208386046|gb|DC956562.1|DC956562
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcag-
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG GEST: gi|208386046|gb|DC956562.1|DC956562
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcag-
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG GEST: gi|208386046|gb|DC956562.1|DC956562
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcag-
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG GEST: gi|162272172|gb|FC448681.1|FC448681
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcag-
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG TATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGAGTTCGTACEST: gi|162170654|gb|FC347150.1|FC347150
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcagTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGAGTTCGTAC
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGGGGATTCAGEST: gi|208395668|gb|DC920258.1|DC920258
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAG---C------TTCAGgtatttgata ... gg
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG -------G-AAGATGTGCGGAAACTTATTAAGGAAGTGGACGAGTTCGTAC
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcagTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGAGTTCGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgatattaagcattttatacaactcttatgtgttatcggatccttaatcatgttagttgtgatttgtattctctgacgtgcgtaaacttccccagagaaagttttatcattacatttttaatagtgttgcgctgccaacttttacgaagggaatattattggatgtggtctaaaacaggggattcag
- - TGAAGA
- - - - - - - - - - - - - - - - - - AGAAGC