1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGATCCAGAGATTTCGAAAAAAATTGCTGTGAAGCTGCAGGAGTTCCACAAGCTTGATATACCAGGGCCACGGAAAGCAAAGCTGTGGGAACGCCTCAGgtagtcctgtctgtgctatcttgctcactttagcactatatgttgtggagagtttttttgcttgtagttatatttttatcagtgttttacttgttattcatgtgttgaatgaggtttctgaaaaactttagtgctcgtcag
species | Physcomitrella patens |
transcript | PP1S50_118V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGCTTGATATACCAGGGCCACGGAAAGCAAAGCTGTGGGAACGCCTCAG GGATTGGTTGGTGAAGATTTTGGAGCATCCCGACACCAGTGATGAGGATTTEST: gi|208395668|gb|DC920258.1|DC920258
genomic: AAGCTTGATATACCAGGGCCACGGAAAGCAAAGCTGTGGGAACGCCTCAGgtagtcctgt ... tgctcgtcagGGATTGGTTGGTGAAGATTTTGGAGCATCCCGACACCAGTGATGAGGATTT
EST: AAGCTTGATATACCAGGGCCACGGAAAGCAAAGCTGTGGGAACGCCTCAG GGATTGGTTGGTGAAGATTTTGGAGCATCCCGACACCAGTGATGAGGATTT
genomic: AAGCTTGATATACCAGGGCCACGGAAAGCAAAGCTGTGGGAACGCCTCAGgtagtcctgt ... tgctcgtcagGGATTGGTTGGTGAAGATTTTGGAGCATCCCGACACCAGTGATGAGGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATCCAGAGATTTCGAAAAAAATTGCTGTGAAGCTGCAGGAGTTCCACAAGCTTGATATACCAGGGCCACGGAAAGCAAAGCTGTGGGAACGCCTCAGgtagtcctgtctgtgctatcttgctcactttagcactatatgttgtggagagtttttttgcttgtagttatatttttatcagtgttttacttgttattcatgtgttgaatgaggtttctgaaaaactttagtgctcgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG