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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcctgtctgtgctatcttgctcactttagcactatatgttgtggagagtttttttgcttgtagttatatttttatcagtgttttacttgttattcatgtgttgaatgaggtttctgaaaaactttagtgctcgtcagGGATTGGTTGGTGAAGATTTTGGAGCATCCCGACACCAGTGATGAGGATTTTGGGCTGAATAAATTGGATGATGAAATCAATGATCTGCAACGTCGACTG

Basic information

species Physcomitrella patens
transcript PP1S50_118V6.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208386046|gb|DC956562.1|DC956562
EST:     AAGCTTGATATACCAGGGCCACGGAAAGCAAAGCTGTGGGAACGCCTCAG                         GGATTGGTTGGTGAAGATTTTGGAGCATCCCGACACCAGTGATGAGGATTT
genomic: AAGCTTGATATACCAGGGCCACGGAAAGCAAAGCTGTGGGAACGCCTCAGgtagtcctgt ... tgctcgtcagGGATTGGTTGGTGAAGATTTTGGAGCATCCCGACACCAGTGATGAGGATTT
EST: gi|208395668|gb|DC920258.1|DC920258
EST:     AAGCTTGATATACCAGGGCCACGGAAAGCAAAGCTGTGGGAACGCCTCAG                         GGATTGGTTGGTGAAGATTTTGGAGCATCCCGACACCAGTGATGAGGATTT
genomic: AAGCTTGATATACCAGGGCCACGGAAAGCAAAGCTGTGGGAACGCCTCAGgtagtcctgt ... tgctcgtcagGGATTGGTTGGTGAAGATTTTGGAGCATCCCGACACCAGTGATGAGGATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttgttattcatgtgttgaatgaggtttctgaaaaactttagtgctcgtcagGGATTGGTTGGTGAAGATTTTGGAGCATCCCGACACCAGTGATGAGGATTTTGGGCTGAATAAATTGGATGATGAAATCAATGATCTGCAACGTCGACTG
                                  aaaaacttta  TA-rich tract