1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagcttattcatatgattctgatcttgaatcttctttcttaatcggacttagtttctacaaatgggtacagaacagtttcctttttccatattttatgaccataactttaaaggggatttctttgcagACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG
species | Physcomitrella patens |
transcript | PP1S50_118V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGATTACCACTCTGATGAGCCGCATTTGTTAAACCAAGAGAGTTTCCCTG ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGGGGEST: gi|67695099|gb|BJ955332.1|BJ955332
genomic: CGATTACCACTCTGATGAGCCGCATTTGTTAAACCAAGAGAGTTTCCCTGgtgagcttat ... ttctttgcagACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAG---C-----
EST: CGATTACCACTCTGATGAGCCGCATTTGTTAAACCAAGAGAGTTTCCCTG ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGGGGEST: gi|208386046|gb|DC956562.1|DC956562
genomic: CGATTACCACTCTGATGAGCCGCATTTGTTAAACCAAGAGAGTTTCCCTGgtgagcttat ... ttctttgcagACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAG---C-----
EST: CGATTACCACTCTGATGAGCCGCATTTGTTAAACCAAGAGAGTTTCCCTG ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGEST: gi|162272172|gb|FC448681.1|FC448681
genomic: CGATTACCACTCTGATGAGCCGCATTTGTTAAACCAAGAGAGTTTCCCTGgtgagcttat ... ttctttgcagACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG
EST: CGATTACCACTCTGATGAGCCGCATTTGTTAAACCAAGAGAGTTTCCCTG ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGEST: gi|162170654|gb|FC347150.1|FC347150
genomic: CGATTACCACTCTGATGAGCCGCATTTGTTAAACCAAGAGAGTTTCCCTGgtgagcttat ... ttctttgcagACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG
EST: CGATTACCACTCTGATGAGCCGCATTTGTTAAACCAAGAGAGTTTCCCTG ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGGGGEST: gi|208395668|gb|DC920258.1|DC920258
genomic: CGATTACCACTCTGATGAGCCGCATTTGTTAAACCAAGAGAGTTTCCCTGgtgagcttat ... ttctttgcagACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAG---C-----
EST: CGATTACCACTCTGATGAGCCGCATTTGTTAAACCAAGAGAGTTTCCCTG ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG
genomic: CGATTACCACTCTGATGAGCCGCATTTGTTAAACCAAGAGAGTTTCCCTGgtgagcttat ... ttctttgcagACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG
cagtttcctttttccatattttatgaccataactttaaaggggatttctttgcagACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG
ccataac putative branch site (score: 3)
tttctttgc putative PPT
tttttccatattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttattcatatgattctgatcttgaatcttctttcttaatcggacttagtttctacaaatgggtacagaacagtttcctttttccatattttatgaccataactttaaaggggatttctttgcagACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC