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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgatattaagcattttatacaactcttatgtgttatcggatccttaatcatgttagttgtgatttgtattctctgacgtgcgtaaacttccccagagaaagttttatcattacatttttaatagtgttgcgctgccaacttttacgaagggaatattattggatgtggtctaaaacaggggattcagTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGAGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCG

Basic information

species Physcomitrella patens
transcript PP1S50_118V6.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37850877|gb|BJ608885.1|BJ608885
EST:     ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGGGGATTCAG                 
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAG---C------TTCAGgtatttgata ... gg
EST: gi|67695099|gb|BJ955332.1|BJ955332
EST:     ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGGGGATTCAG                 
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAG---C------TTCAGgtatttgata ... gg
EST: gi|208386046|gb|DC956562.1|DC956562
EST:     ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG                         G
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcag-
EST: gi|208386046|gb|DC956562.1|DC956562
EST:     ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG                         G
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcag-
EST: gi|208386046|gb|DC956562.1|DC956562
EST:     ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG                         G
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcag-
EST: gi|208386046|gb|DC956562.1|DC956562
EST:     ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG                         G
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcag-
EST: gi|208386046|gb|DC956562.1|DC956562
EST:     ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG                         G
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcag-
EST: gi|162272172|gb|FC448681.1|FC448681
EST:     ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG                         TATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGAGTTCGTAC
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcagTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGAGTTCGTAC
EST: gi|162170654|gb|FC347150.1|FC347150
EST:     ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGGGGATTCAG                 
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAG---C------TTCAGgtatttgata ... gg
EST: gi|208395668|gb|DC920258.1|DC920258
EST:     ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG                         -------G-AAGATGTGCGGAAACTTATTAAGGAAGTGGACGAGTTCGTAC
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... ggggattcagTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGAGTTCGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccaacttttacgaagggaatattattggatgtggtctaaaacaggggattcagTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGAGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTCG
                                   gtctaaa  putative branch site (score: 3)
                   aatattatt  TA-rich tract