Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTACACCATTGAGGCTTCCTGTCACGCTCCCGATCCAgtaagtagcatttggtcatggtggcgtggctgaaggaagtaagtgagaccagtcggatgtggatgtttactttggtggaggaattgtggaaccgtgtagattgatgtgtgcattttgacgaatcatgttcag

Basic information

species Physcomitrella patens
transcript PP1S505_6V6.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208348255|gb|DC905497.1|DC905497
EST:     CGTATGATGCCGTTTACACCATTGAGGCT-CCTGTCACGCTCCCGATCCA                         GTGGCGTGTTATTCA
genomic: CGTATGATGCCGTTTACACCATTGAGGCTTCCTGTCACGCTCCCGATCCAgtaagtagca ... tcatgttcagGTGGCGTGTTATTCA
EST: gi|208372097|gb|DC940279.1|DC940279
EST:     CGTATGATGCCGTTTACACCATTGAGGCTTCCTGTCACGCTCCCGATCCA                         GTGGCGTGTTATTCANAGATTCGGAGAGTTCTGAAACCTGGGCANCTCTTT
genomic: CGTATGATGCCGTTTACACCATTGAGGCTTCCTGTCACGCTCCCGATCCAgtaagtagca ... tcatgttcagGTGGCGTGTTATTCAGAGATTCGGAGAGTTCTGAAACCTGGGCAACTCTTT
EST: gi|100401171|gb|BY990866.1|BY990866
EST:     CGTATGATGCCGTTTACACCATTGAGGCTTCCTGTCACGCTCCCGATCCA                         GTGGCGTGTTATTCAGAGATTCGGAGAGTTCTGAAAACTGGGCAACTCTTT
genomic: CGTATGATGCCGTTTACACCATTGAGGCTTCCTGTCACGCTCCCGATCCAgtaagtagca ... tcatgttcagGTGGCGTGTTATTCAGAGATTCGGAGAGTTCTGAAACCTGGGCAACTCTTT
EST: gi|208388484|gb|DC957066.1|DC957066
EST:     CGTATGATGCCGTTTACACCATTGAGGCTTCCTGTCACGCTCCCGATCCA                         GTGGCGTGTTATTCAGAGATTCGGAGAGTTCTGAAACCTGGGCAACTCTTT
genomic: CGTATGATGCCGTTTACACCATTGAGGCTTCCTGTCACGCTCCCGATCCAgtaagtagca ... tcatgttcagGTGGCGTGTTATTCAGAGATTCGGAGAGTTCTGAAACCTGGGCAACTCTTT
EST: gi|208387195|gb|DC945494.1|DC945494
EST:     CGTATGATGCCGTTTACACCATTGAGGCTTCCTGTCACGCTCCCGATCCA                         GTGGCGTGTTATTCAGAGATTCGGAGAGTTCTGAAACCTGGGCAACTCTTT
genomic: CGTATGATGCCGTTTACACCATTGAGGCTTCCTGTCACGCTCCCGATCCAgtaagtagca ... tcatgttcagGTGGCGTGTTATTCAGAGATTCGGAGAGTTCTGAAACCTGGGCAACTCTTT
EST: gi|208362445|gb|DC930978.1|DC930978
EST:     CGTATGATGCCGTTTACACCATTGAGGCTTCCTGTCACGCTCCCGATCCA                         GTGGCGTGTTATTCAGAGATTCGGAGAGTTCTGAAACCTGGGCANCTCTTN
genomic: CGTATGATGCCGTTTACACCATTGAGGCTTCCTGTCACGCTCCCGATCCAgtaagtagca ... tcatgttcagGTGGCGTGTTATTCAGAGATTCGGAGAGTTCTGAAACCTGGGCAACTCTTT