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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtctttgcagtaccttcccaacacagtttgaatttgtagggacttgggagacctgagagggtagcgtatgctagaactgtagtttccggcaaca...

Basic information

species Physcomitrella patens
transcript PP1S505_6V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208348255|gb|DC905497.1|DC905497
EST:     GTTTTGACTGAGAAAGCTGGGCTGAGTCTTCTTGTTGACTACATGAAG                         GCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
genomic: GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
EST: gi|208350053|gb|DC910288.1|DC910288
EST:     GTTTTGACTGA-AAAGCTGGGCTGANTCATCTTGTTGACTACATGAAN                         GCCGATTT-ATGAAAATACCGGTNGCGGACA
genomic: GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGAAGATACCGGTTGCGGACA
EST: gi|208372097|gb|DC940279.1|DC940279
EST:     GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG                         GCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
genomic: GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
EST: gi|100352660|gb|BY945383.1|BY945383
EST:     GTTTTTGACTGAAAAACCTGGGCTGAGTCATCTTGTTGACTTACATGAAG                         GGCGATTTTATGAAGATCCCGGTTGGCGGACAAACACGT
genomic: GTTTT-GACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACT-ACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGAAGATACCGGTTG-CGGACAA-CACGT
EST: gi|208353412|gb|DC938689.1|DC938689
EST:     GTTTTGACTGANAAAGCTGGGCTGANTCATCTTGTTGACTACATGAAG                         GCCGATTTTATGAANATACCGGTTGCGNANA-CACNTATGATGCCGTTTAC
genomic: GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
EST: gi|100401171|gb|BY990866.1|BY990866
EST:     GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG                         GCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
genomic: GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
EST: gi|208377072|gb|DC910846.1|DC910846
EST:     GTTTTGACTGANAAANCTGGGCTGANTCATCTTGTTGACTAC-TGAAN                         GCCNATTT-ATGA
genomic: GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGA
EST: gi|208388484|gb|DC957066.1|DC957066
EST:     AGGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG                         GCCGATTTTATGAAGATACC-GNTGCGGACAACACGTATGATGCCGTTTAC
genomic: AGGTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
EST: gi|100359507|gb|BY947022.1|BY947022
EST:     GNTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG                         GCCGATTTTATGAAGATACCGGGTGCNGACNACACGTATGATGCCGTTTAC
genomic: G-TTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
EST: gi|208387195|gb|DC945494.1|DC945494
EST:     TTGACTACATGAAG                         GCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
genomic: TTGACTACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
EST: gi|100399512|gb|BY972756.1|BY972756
EST:     GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGGAG                         GCCGATTTTATGAA
genomic: GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGAA
EST: gi|208376766|gb|DC902947.1|DC902947
EST:     GTTTTGACTGANAAAGCTGGGCTGANTCATCTTGTTGACTACATGAAG                         GCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
genomic: GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
EST: gi|208350009|gb|DC910244.1|DC910244
EST:     GTTTTGACTGANAAAGCTGGGCTGANTCATCTTGTTGACTACATGAAG                         GCCGATTTTATGA
genomic: GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGA
EST: gi|208362445|gb|DC930978.1|DC930978
EST:     GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAG                         GCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC
genomic: GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtct ... tgtcatgcagGCCGATTTTATGAAGATACCGGTTGCGGACAACACGTATGATGCCGTTTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTGACTGAGAAAGCTGGGCTGAGTCATCTTGTTGACTACATGAAGgtaagggtctttgcagtaccttcccaacacagtttgaatttgtagggacttgggagacctgagagggtagcgtatgctagaactgtagtttccggcaaca

- - - - - -  AAGCTG