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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAACAAGTACTACGACCTTGTTAACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattattaacgtctgcttggtctcaaatcgtggaacatggtcggaacacttgtatagcctaagatgactcgggtccggatccaacatttccaccgact...

Basic information

species Physcomitrella patens
transcript PP1S505_6V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208348255|gb|DC905497.1|DC905497
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|208350053|gb|DC910288.1|DC910288
EST:     AACAGCTTCTACGANTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|208372097|gb|DC940279.1|DC940279
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|100352660|gb|BY945383.1|BY945383
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|100419397|gb|BY957563.1|BY957563
EST:     AACAGCTTCTACCAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|208353412|gb|DC938689.1|DC938689
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|100401171|gb|BY990866.1|BY990866
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|100422729|gb|BY957971.1|BY957971
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|18368307|gb|BJ200392.1|BJ200392
EST:     ACAGCTTCTACGAGTATGGGTGGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: ACAGCTTCTACGAGTATGGGTGGGG-AGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|208377072|gb|DC910846.1|DC910846
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|100444750|gb|BY982579.1|BY982579
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|100386024|gb|BY969963.1|BY969963
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|100359507|gb|BY947022.1|BY947022
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|100444882|gb|BY982710.1|BY982710
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGGAAAC-CTTTCGTGAAAACATTAAACGA-ACCGAGCATTT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGG-AAACGCTT-CGTGAAAGCATTAAACGACAC-GAGCATTT
EST: gi|100435518|gb|BY960952.1|BY960952
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGNGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|100399512|gb|BY972756.1|BY972756
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|208400164|gb|DC904812.1|DC904812
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|208391832|gb|DC942352.1|DC942352
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|67719022|gb|BJ969281.1|BJ969281
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|100440118|gb|BY980404.1|BY980404
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|208376766|gb|DC902947.1|DC902947
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|18360513|gb|BJ192576.1|BJ192576
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|208350009|gb|DC910244.1|DC910244
EST:     AACAGCTCCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|208362445|gb|DC930978.1|DC930978
EST:     AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT
EST: gi|100428843|gb|BY959461.1|BY959461
EST:     AACAGCTTCTACGAGTATGGGTGGNGAGAGTCTTACCACTTTGCCAACAG                         ATGGCGCGGGGAAACGCTTCGTGGAAGCATTAAACGACACGAGCATTTTCT
genomic: AACAGCTTCTACGAGTATGGGTGGGGAGAGTCTTACCACTTTGCCAACAGgtgattatta ... ttaaccgcagATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCT