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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgtgtatgaagatcagtggttgacgagagagtgaggttgtgttggaatgtggcagtttgttttctttttttactgatgtgggttttgtggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATTTGGTGAGCAACATTGGCGGAGTTTTGCCGAAACATGAGGTCCTCAAGTC

Basic information

species Physcomitrella patens
transcript PP1S505_6V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208348255|gb|DC905497.1|DC905497
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|208350053|gb|DC910288.1|DC910288
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|208372097|gb|DC940279.1|DC940279
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|100352660|gb|BY945383.1|BY945383
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|100419397|gb|BY957563.1|BY957563
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|208353412|gb|DC938689.1|DC938689
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|100401171|gb|BY990866.1|BY990866
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|100422729|gb|BY957971.1|BY957971
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|18368307|gb|BJ200392.1|BJ200392
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|208377072|gb|DC910846.1|DC910846
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|100444750|gb|BY982579.1|BY982579
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|100386024|gb|BY969963.1|BY969963
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|100359507|gb|BY947022.1|BY947022
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|100444882|gb|BY982710.1|BY982710
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|100435518|gb|BY960952.1|BY960952
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|100399512|gb|BY972756.1|BY972756
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|208400164|gb|DC904812.1|DC904812
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|208391832|gb|DC942352.1|DC942352
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|67719022|gb|BJ969281.1|BJ969281
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|100440118|gb|BY980404.1|BY980404
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|208376766|gb|DC902947.1|DC902947
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|18360513|gb|BJ192576.1|BJ192576
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|208350009|gb|DC910244.1|DC910244
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|208362445|gb|DC930978.1|DC930978
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
EST: gi|100428843|gb|BY959461.1|BY959461
EST:     TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAG                         GTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT
genomic: TCACTGCAGCAGCTCTTTGCGTGGTCCTGTTTCCCTCGGCGTCCACAGAGgttgtgcaca ... ggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaatgtggcagtttgttttctttttttactgatgtgggttttgtggtggtgaagGTTTGTGGGTGCAGAAGTTGGCAGATATGGCGAAGGAAGGGGCGAGGCATTTGGTGAGCAACATTGGCGGAGTTTTGCCGAAACATGAGGTCCTCAAGTC
                           tactgat  putative branch site (score: 2)
            tttgttttcttttttt  TA-rich tract